Information for 2-RTGACKTCTCAGAATG (Motif 4)

T C A G A C G T A T C G C G T A A G T C C A G T A C G T A G T C C G A T A G T C C G T A A T C G C G T A C T G A G C A T A T C G
Reverse Opposite:
A T G C C G T A A G C T A C G T A T G C C G A T A C T G C G T A A C T G C G T A G T C A C T A G C G A T A T G C C G T A A G T C
p-value:1e-17
log p-value:-4.064e+01
Information Content per bp:1.739
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.23%
Number of Background Sequences with motif3.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets44.8 +/- 21.5bp
Average Position of motif in Background63.9 +/- 35.9bp
Strand Bias (log2 ratio + to - strand density)1.2
Multiplicity (# of sites on avg that occur together)1.11
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CRE(bZIP)/Promoter/Homer

Match Rank:1
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--RTGACKTCTCAGAATG
CGGTGACGTCAC------
 A C G T A C G T T C A G A C G T A T C G C G T A A G T C C A G T A C G T A G T C C G A T A G T C C G T A A T C G C G T A C T G A G C A T A T C G
A T G C A T C G T A C G A G C T A T C G C T G A A G T C C T A G A G C T A T G C C T G A A T G C A C G T A C G T A C G T A C G T A C G T A C G T

PB0004.1_Atf1_1/Jaspar

Match Rank:2
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---RTGACKTCTCAGAATG
ACGATGACGTCATCGA---
 A C G T A C G T A C G T T C A G A C G T A T C G C G T A A G T C C A G T A C G T A G T C C G A T A G T C C G T A A T C G C G T A C T G A G C A T A T C G
C G T A A G T C C A T G T C G A A G C T A C T G C G T A A G T C C T A G G C A T G T A C C T G A A G C T G T A C C T A G C T G A A C G T A C G T A C G T

Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer

Match Rank:3
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--RTGACKTCTCAGAATG
NGRTGACGTCAY------
 A C G T A C G T T C A G A C G T A T C G C G T A A G T C C A G T A C G T A G T C C G A T A G T C C G T A A T C G C G T A C T G A G C A T A T C G
T A G C C T A G T C G A G A C T A C T G C T G A A G T C T C A G G C A T T G A C C T G A A G C T A C G T A C G T A C G T A C G T A C G T A C G T

Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer

Match Rank:4
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--RTGACKTCTCAGAATG
NRRTGACGTCAT------
 A C G T A C G T T C A G A C G T A T C G C G T A A G T C C A G T A C G T A G T C C G A T A G T C C G T A A T C G C G T A C T G A G C A T A T C G
A T G C T C A G T C G A G C A T A C T G C G T A A G T C T C A G G A C T T G A C C G T A A G C T A C G T A C G T A C G T A C G T A C G T A C G T

JunD(bZIP)/K562-JunD-ChIP-Seq/Homer

Match Rank:5
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--RTGACKTCTCAGAATG
NGATGACGTCAT------
 A C G T A C G T T C A G A C G T A T C G C G T A A G T C C A G T A C G T A G T C C G A T A G T C C G T A A T C G C G T A C T G A G C A T A T C G
A G C T C T A G T C G A A C G T A C T G C T G A A G T C T C A G A G C T G T A C C G T A A G C T A C G T A C G T A C G T A C G T A C G T A C G T

Creb5/MA0840.1/Jaspar

Match Rank:6
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-RTGACKTCTCAGAATG
AATGACGTCACC-----
 A C G T T C A G A C G T A T C G C G T A A G T C C A G T A C G T A G T C C G A T A G T C C G T A A T C G C G T A C T G A G C A T A T C G
T C G A T C G A G A C T C A T G C G T A A G T C C T A G G C A T G T A C C G T A A G T C G A T C A C G T A C G T A C G T A C G T A C G T

JDP2(var.2)/MA0656.1/Jaspar

Match Rank:7
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-RTGACKTCTCAGAATG
GATGACGTCATC-----
 A C G T T C A G A C G T A T C G C G T A A G T C C A G T A C G T A G T C C G A T A G T C C G T A A T C G C G T A C T G A G C A T A T C G
T A C G T C G A A G C T C A T G G T C A A G T C T C A G G A C T T G A C T G C A A G C T T G A C A C G T A C G T A C G T A C G T A C G T

c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--RTGACKTCTCAGAATG
NGATGACGTCAT------
 A C G T A C G T T C A G A C G T A T C G C G T A A G T C C A G T A C G T A G T C C G A T A G T C C G T A A T C G C G T A C T G A G C A T A T C G
C T A G T C A G T C G A C G A T C A T G C T G A A G T C T C A G G A C T T G A C C G T A A G C T A C G T A C G T A C G T A C G T A C G T A C G T

Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer

Match Rank:9
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-RTGACKTCTCAGAATG
GATGACGTCA-------
 A C G T T C A G A C G T A T C G C G T A A G T C C A G T A C G T A G T C C G A T A G T C C G T A A T C G C G T A C T G A G C A T A T C G
T A C G T C G A G A C T A C T G C T G A A G T C T C A G G A C T T G A C C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

ATF7/MA0834.1/Jaspar

Match Rank:10
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--RTGACKTCTCAGAATG
CGATGACGTCATCG----
 A C G T A C G T T C A G A C G T A T C G C G T A A G T C C A G T A C G T A G T C C G A T A G T C C G T A A T C G C G T A C T G A G C A T A T C G
A G T C C T A G T C G A C A G T C A T G C T G A A G T C T C A G C A G T T G A C C T G A A G C T G T A C T C A G A C G T A C G T A C G T A C G T