Information for 16-GAAATGGCCA (Motif 38)

A C T G C G T A C G T A C G T A A C G T A C T G A C T G A G T C A G T C C G T A
Reverse Opposite:
A C G T A C T G A C T G A G T C A G T C C G T A A C G T A C G T A C G T A G T C
p-value:1e-3
log p-value:-8.583e+00
Information Content per bp:1.530
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.41%
Number of Background Sequences with motif8.0
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets39.2 +/- 34.5bp
Average Position of motif in Background42.7 +/- 21.7bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

YY2/MA0748.1/Jaspar

Match Rank:1
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:GAAATGGCCA--
-TAATGGCGGNC
 A C T G C G T A C G T A C G T A A C G T A C T G A C T G A G T C A G T C C G T A A C G T A C G T
A C G T G C A T C T G A C G T A G C A T C T A G A C T G A T G C T A C G C T A G G C T A G A T C

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:2
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-GAAATGGCCA
GGAAATTCCC-
 A C G T A C T G C G T A C G T A C G T A A C G T A C T G A C T G A G T C A G T C C G T A
A C T G C A T G G C T A T C G A G C T A A G C T A G C T G T A C A G T C T G A C A C G T

YY1/MA0095.2/Jaspar

Match Rank:3
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-GAAATGGCCA-
CAAGATGGCGGC
 A C G T A C T G C G T A C G T A C G T A A C G T A C T G A C T G A G T C A G T C C G T A A C G T
T G A C C T G A T C G A T C A G C G T A A G C T C T A G C T A G G T A C A C T G T C A G G T A C

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:4
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-GAAATGGCCA
GTTAATGGCC-
 A C G T A C T G C G T A C G T A C G T A A C G T A C T G A C T G A G T C A G T C C G T A
A T C G A G C T C A G T T C G A C T G A C G A T C A T G C T A G A T G C G A T C A C G T

Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer

Match Rank:5
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--GAAATGGCCA
ANGNAAAGGTCA
 A C G T A C G T A C T G C G T A C G T A C G T A A C G T A C T G A C T G A G T C A G T C C G T A
C T G A A C T G C A T G C A G T C G T A C G T A C G T A A C T G A C T G A C G T A G T C C G T A

PB0137.1_Irf3_2/Jaspar

Match Rank:6
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---GAAATGGCCA-
GGAGAAAGGTGCGA
 A C G T A C G T A C G T A C T G C G T A C G T A C G T A A C G T A C T G A C T G A G T C A G T C C G T A A C G T
C T A G C A T G C G T A C T A G C G T A G C T A C G T A A T C G T A C G C G A T A T C G A G T C C T A G C T G A

RELA/MA0107.1/Jaspar

Match Rank:7
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-GAAATGGCCA
GGAAATTCCC-
 A C G T A C T G C G T A C G T A C G T A A C G T A C T G A C T G A G T C A G T C C G T A
A C T G A C T G C T G A C G T A C G T A A G C T A G C T A G T C G T A C T A G C A C G T

PB0049.1_Nr2f2_1/Jaspar

Match Rank:8
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--GAAATGGCCA----
TCTCAAAGGTCACGAG
 A C G T A C G T A C T G C G T A C G T A C G T A A C G T A C T G A C T G A G T C A G T C C G T A A C G T A C G T A C G T A C G T
C A G T G T A C A C G T G T A C C G T A C T G A C T G A A C T G A C T G A C G T A G T C C T G A G T A C T A C G C G T A A C T G

ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:9
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-GAAATGGCCA----
AGAAATGACTTCCCT
 A C G T A C T G C G T A C G T A C G T A A C G T A C T G A C T G A G T C A G T C C G T A A C G T A C G T A C G T A C G T
C T G A C T A G T G C A C T G A T C G A A G C T C A T G T C G A A G T C G A C T A C G T A G T C G A T C G A T C G A C T

NFIC/MA0161.1/Jaspar

Match Rank:10
Score:0.56
Offset:5
Orientation:reverse strand
Alignment:GAAATGGCCA-
-----TGCCAA
 A C T G C G T A C G T A C G T A A C G T A C T G A C T G A G T C A G T C C G T A A C G T
A C G T A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A