Information for 9-GAAGTCACYGTCC (Motif 19)

A C T G C G T A C G T A A T C G A C G T A T G C G T C A A G T C A G T C A T C G A C G T A G T C A G T C
Reverse Opposite:
A C T G A C T G T C G A A T G C C T A G A C T G A C G T A T C G C G T A A T G C C G A T A C G T A G T C
p-value:1e-9
log p-value:-2.210e+01
Information Content per bp:1.838
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.82%
Number of Background Sequences with motif5.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets52.3 +/- 22.5bp
Average Position of motif in Background52.3 +/- 29.1bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.17
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer

Match Rank:1
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:GAAGTCACYGTCC-
NAGGTCANTGACCT
 A C T G C G T A C G T A A T C G A C G T A T G C G T C A A G T C A G T C A T C G A C G T A G T C A G T C A C G T
T C A G T C G A C T A G C A T G A C G T A T G C T C G A G A C T A G C T T A C G T G C A G T A C G T A C A G C T

CRE(bZIP)/Promoter/Homer

Match Rank:2
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--GAAGTCACYGTCC
GTGACGTCACCG---
 A C G T A C G T A C T G C G T A C G T A A T C G A C G T A T G C G T C A A G T C A G T C A T C G A C G T A G T C A G T C
T A C G A G C T A T C G C T G A A G T C C T A G A G C T A T G C C T G A A T G C T A G C T A C G A C G T A C G T A C G T

VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer

Match Rank:3
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----GAAGTCACYGTCC---
NNNTGAACTCNNTGACCTCN
 A C G T A C G T A C G T A C G T A C T G C G T A C G T A A T C G A C G T A T G C G T C A A G T C A G T C A T C G A C G T A G T C A G T C A C G T A C G T A C G T
G T A C G A T C G T C A G C A T T C A G G T C A G T C A G T A C A G C T A G T C C G T A T A C G G C A T T A C G T G C A G T A C G A T C G A C T A G T C G A C T

RXRA::VDR/MA0074.1/Jaspar

Match Rank:4
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-GAAGTCACYGTCC-
TGAACCCGATGACCC
 A C G T A C T G C G T A C G T A A T C G A C G T A T G C G T C A A G T C A G T C A T C G A C G T A G T C A G T C A C G T
A G C T C T A G C G T A C G T A A G T C A G C T A G T C A C T G C G A T A G C T C T A G C G T A G T A C A G T C A G T C

PB0004.1_Atf1_1/Jaspar

Match Rank:5
Score:0.57
Offset:-5
Orientation:forward strand
Alignment:-----GAAGTCACYGTCC
ACGATGACGTCATCGA--
 A C G T A C G T A C G T A C G T A C G T A C T G C G T A C G T A A T C G A C G T A T G C G T C A A G T C A G T C A T C G A C G T A G T C A G T C
C G T A A G T C C A T G T C G A A G C T A C T G C G T A A G T C C T A G G C A T G T A C C T G A A G C T G T A C C T A G C T G A A C G T A C G T

Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer

Match Rank:6
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--GAAGTCACYGTCC
RTGACGTCAYCN---
 A C G T A C G T A C T G C G T A C G T A A T C G A C G T A T G C G T C A A G T C A G T C A T C G A C G T A G T C A G T C
T C G A G A C T A C T G C G T A A G T C T C A G G A C T T G A C C T G A A G C T G A T C A T C G A C G T A C G T A C G T

PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer

Match Rank:7
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--GAAGTCACYGTCC
VAGRACAKNCTGTBC
 A C G T A C G T A C T G C G T A C G T A A T C G A C G T A T G C G T C A A G T C A G T C A T C G A C G T A G T C A G T C
T G A C C T G A C T A G T C G A C T G A A T G C C G T A A C T G G C A T G T A C G C A T A T C G G C A T A G C T G A T C

PB0038.1_Jundm2_1/Jaspar

Match Rank:8
Score:0.55
Offset:-5
Orientation:forward strand
Alignment:-----GAAGTCACYGTCC
CCGATGACGTCATCGT--
 A C G T A C G T A C G T A C G T A C G T A C T G C G T A C G T A A T C G A C G T A T G C G T C A A G T C A G T C A T C G A C G T A G T C A G T C
A T G C A T G C A C T G T C G A A G C T A C T G C G T A A G T C C T A G G C A T T G A C C T G A A G C T G T A C T C A G G A C T A C G T A C G T

JunD(bZIP)/K562-JunD-ChIP-Seq/Homer

Match Rank:9
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--GAAGTCACYGTCC
ATGACGTCATCN---
 A C G T A C G T A C T G C G T A C G T A A T C G A C G T A T G C G T C A A G T C A G T C A T C G A C G T A G T C A G T C
T C G A A C G T A C T G C T G A A G T C T C A G A G C T G T A C C G T A A G C T G A T C T C G A A C G T A C G T A C G T

Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer

Match Rank:10
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--GAAGTCACYGTCC
ATGACGTCAYYN---
 A C G T A C G T A C T G C G T A C G T A A T C G A C G T A T G C G T C A A G T C A G T C A T C G A C G T A G T C A G T C
T C G A G C A T A C T G C T G A A G T C T C A G G C A T T G A C C G T A A G C T A G T C T A C G A C G T A C G T A C G T