Information for 17-ATTVAATHAS (Motif 41)

G C T A C G A T C G A T T C G A C T G A G T C A G A C T G A C T C T G A T A G C
Reverse Opposite:
A T C G G A C T C T G A C T G A C A G T G A C T A G C T G C T A G C T A C G A T
p-value:1e-7
log p-value:-1.618e+01
Information Content per bp:1.580
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif1.71%
Number of Background Sequences with motif116.8
Percentage of Background Sequences with motif0.25%
Average Position of motif in Targets50.7 +/- 24.7bp
Average Position of motif in Background45.6 +/- 30.9bp
Strand Bias (log2 ratio + to - strand density)-1.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Arid3a/MA0151.1/Jaspar

Match Rank:1
Score:0.75
Offset:0
Orientation:forward strand
Alignment:ATTVAATHAS
ATTAAA----
 G C T A C G A T C G A T T C G A C T G A G T C A G A C T G A C T C T G A T A G C
C G T A A C G T G A C T C G T A C G T A C G T A A C G T A C G T A C G T A C G T

PB0068.1_Sox1_1/Jaspar

Match Rank:2
Score:0.73
Offset:-5
Orientation:forward strand
Alignment:-----ATTVAATHAS-
AATCAATTCAATAATT
 A C G T A C G T A C G T A C G T A C G T G C T A C G A T C G A T T C G A C T G A G T C A G A C T G A C T C T G A T A G C A C G T
G C A T C G T A C A G T G A T C G C T A G C T A G C A T C G A T T A G C G C T A G C T A G C A T C G T A G T C A C G A T A C G T

PROP1/MA0715.1/Jaspar

Match Rank:3
Score:0.73
Offset:-2
Orientation:reverse strand
Alignment:--ATTVAATHAS
TAATTAAATTA-
 A C G T A C G T G C T A C G A T C G A T T C G A C T G A G T C A G A C T G A C T C T G A T A G C
G C A T C T G A C G T A G A C T C A G T G C T A C T G A C G T A A G C T C G A T C G T A A C G T

PHOX2A/MA0713.1/Jaspar

Match Rank:4
Score:0.72
Offset:-2
Orientation:reverse strand
Alignment:--ATTVAATHAS
TAATTAAATTA-
 A C G T A C G T G C T A C G A T C G A T T C G A C T G A G T C A G A C T G A C T C T G A T A G C
G C A T C G T A T C G A A G C T A G C T C T G A T C G A C T G A G A C T G A C T C G T A A C G T

Phox2b/MA0681.1/Jaspar

Match Rank:5
Score:0.71
Offset:-2
Orientation:reverse strand
Alignment:--ATTVAATHAS
TAATTAAATTA-
 A C G T A C G T G C T A C G A T C G A T T C G A C T G A G T C A G A C T G A C T C T G A T A G C
G C A T C G T A C T G A A G C T A G C T C T G A T C G A C T G A A G C T G A C T C G T A A C G T

DUXA/MA0884.1/Jaspar

Match Rank:6
Score:0.69
Offset:-3
Orientation:reverse strand
Alignment:---ATTVAATHAS
NTGATTAAATTAN
 A C G T A C G T A C G T G C T A C G A T C G A T T C G A C T G A G T C A G A C T G A C T C T G A T A G C
G A C T G C A T T C A G T G C A A G C T A C G T T C G A T C G A C T G A A G C T G A C T C T G A C T A G

DUX4/MA0468.1/Jaspar

Match Rank:7
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--ATTVAATHAS
TGATTAAATTA-
 A C G T A C G T G C T A C G A T C G A T T C G A C T G A G T C A G A C T G A C T C T G A T A G C
C G A T C T A G C G T A A C G T C A G T T C G A T C G A C T G A A C G T A G C T C G T A A C G T

Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer

Match Rank:8
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--ATTVAATHAS
TAATYNRATTAR
 A C G T A C G T G C T A C G A T C G A T T C G A C T G A G T C A G A C T G A C T C T G A T A G C
G C A T C G T A C G T A G A C T A G C T G C A T T C G A T C G A A C G T G A C T C G T A C T A G

Arid3b/MA0601.1/Jaspar

Match Rank:9
Score:0.67
Offset:-3
Orientation:reverse strand
Alignment:---ATTVAATHAS
NTAATTAATAT--
 A C G T A C G T A C G T G C T A C G A T C G A T T C G A C T G A G T C A G A C T G A C T C T G A T A G C
A C G T A C G T C G T A C G T A C G A T A C G T C G T A C G T A C G A T C G T A A C G T A C G T A C G T

LIN54/MA0619.1/Jaspar

Match Rank:10
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-ATTVAATHAS
NATTCAAAT--
 A C G T G C T A C G A T C G A T T C G A C T G A G T C A G A C T G A C T C T G A T A G C
C T G A C T G A A C G T A C G T A G T C C T G A C G T A C G T A G C A T A C G T A C G T