Information for 4-GCCAGCAGGTGGC (Motif 7)

C A T G A G T C A G T C C G T A A T C G A G T C C G T A C T A G T C A G A C G T A C T G C T A G A G T C
Reverse Opposite:
C T A G A G T C A G T C G T C A A G T C A G T C A C G T C T A G A T G C C G A T A C T G A C T G G T A C
p-value:1e-16
log p-value:-3.750e+01
Information Content per bp:1.834
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.84%
Number of Background Sequences with motif18.0
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets42.4 +/- 24.9bp
Average Position of motif in Background61.0 +/- 25.6bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.88
Offset:0
Orientation:reverse strand
Alignment:GCCAGCAGGTGGC-------
GCCASCAGGGGGCGCYVNNG
 C A T G A G T C A G T C C G T A A T C G A G T C C G T A C T A G T C A G A C G T A C T G C T A G A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

CTCF/MA0139.1/Jaspar

Match Rank:2
Score:0.88
Offset:-2
Orientation:forward strand
Alignment:--GCCAGCAGGTGGC----
TGGCCACCAGGGGGCGCTA
 A C G T A C G T C A T G A G T C A G T C C G T A A T C G A G T C C G T A C T A G T C A G A C G T A C T G C T A G A G T C A C G T A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:3
Score:0.87
Offset:-2
Orientation:reverse strand
Alignment:--GCCAGCAGGTGGC-----
TGGCCACCAGGTGGCACTNT
 A C G T A C G T C A T G A G T C A G T C C G T A A T C G A G T C C G T A C T A G T C A G A C G T A C T G C T A G A G T C A C G T A C G T A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:4
Score:0.72
Offset:3
Orientation:reverse strand
Alignment:GCCAGCAGGTGGC
---AACAGATGGC
 C A T G A G T C A G T C C G T A A T C G A G T C C G T A C T A G T C A G A C G T A C T G C T A G A G T C
A C G T A C G T A C G T C T G A T C G A A G T C G T C A A C T G T G C A G C A T A C T G A C T G A G T C

Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer

Match Rank:5
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:GCCAGCAGGTGGC-
--SDGCAGGTGCNS
 C A T G A G T C A G T C C G T A A T C G A G T C C G T A C T A G T C A G A C G T A C T G C T A G A G T C A C G T
A C G T A C G T A T C G C T A G C T A G A G T C C G T A A C T G A C T G A C G T A C T G A T G C G A T C A T G C

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:6
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-GCCAGCAGGTGGC-
DCHCAGCAGGRGGCC
 A C G T C A T G A G T C A G T C C G T A A T C G A G T C C G T A C T A G T C A G A C G T A C T G C T A G A G T C A C G T
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer

Match Rank:7
Score:0.65
Offset:1
Orientation:forward strand
Alignment:GCCAGCAGGTGGC
-VNAVCAGCTGGC
 C A T G A G T C A G T C C G T A A T C G A G T C C G T A C T A G T C A G A C G T A C T G C T A G A G T C
A C G T T C A G A C G T T C G A T A G C A G T C C G T A A C T G G T A C A C G T A C T G A T C G A G T C

NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer

Match Rank:8
Score:0.65
Offset:3
Orientation:reverse strand
Alignment:GCCAGCAGGTGGC
---AACAGATGGT
 C A T G A G T C A G T C C G T A A T C G A G T C C G T A C T A G T C A G A C G T A C T G C T A G A G T C
A C G T A C G T A C G T T C G A T C G A A G T C C G T A A C T G G T C A G C A T A C T G A C T G A G C T

Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer

Match Rank:9
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:GCCAGCAGGTGGC
--CAGCAGCTGN-
 C A T G A G T C A G T C C G T A A T C G A G T C C G T A C T A G T C A G A C G T A C T G C T A G A G T C
A C G T A C G T T G A C T C G A T C A G A G T C C G T A A T C G A T G C A C G T A C T G A G C T A C G T

E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:10
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:GCCAGCAGGTGGC
---NNCAGGTGNN
 C A T G A G T C A G T C C G T A A T C G A G T C C G T A C T A G T C A G A C G T A C T G C T A G A G T C
A C G T A C G T A C G T C A G T T A C G A G T C C G T A A C T G A C T G A C G T A C T G A C G T T A C G