Information for 3-TGCCACCATGACTAWT (Motif 5)

C G A T A T C G A G T C G A T C C T G A A G T C A G T C G C T A A C G T A C T G C G T A A G T C C G A T C G T A C G A T A C G T
Reverse Opposite:
C G T A C G A T A C G T C G T A A C T G A C G T A G T C G T C A C G A T C T A G C T A G A G C T C A T G A C T G A T G C C G T A
p-value:1e-16
log p-value:-3.843e+01
Information Content per bp:1.763
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif1.07%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets56.1 +/- 24.3bp
Average Position of motif in Background58.0 +/- 4.2bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer

Match Rank:1
Score:0.78
Offset:4
Orientation:forward strand
Alignment:TGCCACCATGACTAWT---
----ACCGTGACTAATTNN
 C G A T A T C G A G T C G A T C C T G A A G T C A G T C G C T A A C G T A C T G C G T A A G T C C G A T C G T A C G A T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G T A T A G C A G T C C T A G C A G T C T A G C T G A G T A C G C A T T C G A C G T A G C A T A G C T C T A G T C G A

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:2
Score:0.60
Offset:0
Orientation:forward strand
Alignment:TGCCACCATGACTAWT
TGGCACCATGCCAA--
 C G A T A T C G A G T C G A T C C T G A A G T C A G T C G C T A A C G T A C T G C G T A A G T C C G A T C G T A C G A T A C G T
A C G T A C T G A C T G A G T C G C T A T A G C A T G C C T G A G C A T A C T G A G T C A G T C C G T A C G T A A C G T A C G T

PB0165.1_Sox11_2/Jaspar

Match Rank:3
Score:0.59
Offset:4
Orientation:reverse strand
Alignment:TGCCACCATGACTAWT--
----NNCNNAACAATTNT
 C G A T A T C G A G T C G A T C C T G A A G T C A G T C G C T A A C G T A C T G C G T A A G T C C G A T C G T A C G A T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G C A T G A C T A G T C G T C A C G A T C T G A C G T A A G T C C G T A T C G A A G C T G A C T G A C T G C A T

MAFG::NFE2L1/MA0089.1/Jaspar

Match Rank:4
Score:0.58
Offset:6
Orientation:forward strand
Alignment:TGCCACCATGACTAWT
------CATGAC----
 C G A T A T C G A G T C G A T C C T G A A G T C A G T C G C T A A C G T A C T G C G T A A G T C C G A T C G T A C G A T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T A G C T C G A A C G T C A T G C G T A A G T C A C G T A C G T A C G T A C G T

Pax2/MA0067.1/Jaspar

Match Rank:5
Score:0.58
Offset:5
Orientation:reverse strand
Alignment:TGCCACCATGACTAWT
-----NCGTGACN---
 C G A T A T C G A G T C G A T C C T G A A G T C A G T C G C T A A C G T A C T G C G T A A G T C C G A T C G T A C G A T A C G T
A C G T A C G T A C G T A C G T A C G T T A C G G T A C C T A G A G C T T C A G C G T A G A T C C G A T A C G T A C G T A C G T

Nr2e1/MA0676.1/Jaspar

Match Rank:6
Score:0.58
Offset:7
Orientation:reverse strand
Alignment:TGCCACCATGACTAWT
-------TTGACTTTT
 C G A T A T C G A G T C G A T C C T G A A G T C A G T C G C T A A C G T A C T G C G T A A G T C C G A T C G T A C G A T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T A C G T T C A G C T G A G A T C G A C T G A C T G A C T C G A T

NFE2/MA0841.1/Jaspar

Match Rank:7
Score:0.57
Offset:6
Orientation:forward strand
Alignment:TGCCACCATGACTAWT-
------CATGACTCATC
 C G A T A T C G A G T C G A T C C T G A A G T C A G T C G C T A A C G T A C T G C G T A A G T C C G A T C G T A C G A T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T G A C T C G A G A C T A C T G G T C A T A G C A G C T G A T C T G C A A G C T A T G C

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:8
Score:0.57
Offset:7
Orientation:forward strand
Alignment:TGCCACCATGACTAWT-
-------ATGAATATTC
 C G A T A T C G A G T C G A T C C T G A A G T C A G T C G C T A A C G T A C T G C G T A A G T C C G A T C G T A C G A T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C T A A G C T T A C G G T C A C T G A C G A T C T G A G C A T C A G T A G T C

JDP2/MA0655.1/Jaspar

Match Rank:9
Score:0.57
Offset:7
Orientation:forward strand
Alignment:TGCCACCATGACTAWT
-------ATGACTCAT
 C G A T A T C G A G T C G A T C C T G A A G T C A G T C G C T A A C G T A C T G C G T A A G T C C G A T C G T A C G A T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A G A C T A C T G C G T A T A G C C A G T G T A C C G T A G A C T

MEIS1/MA0498.2/Jaspar

Match Rank:10
Score:0.56
Offset:7
Orientation:forward strand
Alignment:TGCCACCATGACTAWT
-------TTGACAG--
 C G A T A T C G A G T C G A T C C T G A A G T C A G T C G C T A A C G T A C T G C G T A A G T C C G A T C G T A C G A T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C A T G C A T A T C G T G C A A G T C C T G A C T A G A C G T A C G T