Information for 1-TGCCATTAGAGCCTTA (Motif 7)

A C G T A C T G A G T C G T A C C G T A A C G T A G C T C G T A A T C G C G T A A C T G A G T C A G T C A C G T A C G T G T C A
Reverse Opposite:
A C G T C G T A C G T A A C T G A C T G A G T C A C G T A T G C C G A T C T G A G T C A A C G T A C T G A C T G T G A C C G T A
p-value:1e-10
log p-value:-2.483e+01
Information Content per bp:1.911
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.57%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets55.8 +/- 16.2bp
Average Position of motif in Background80.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0194.1_Zbtb12_2/Jaspar

Match Rank:1
Score:0.60
Offset:0
Orientation:forward strand
Alignment:TGCCATTAGAGCCTTA
TATCATTAGAACGCT-
 A C G T A C T G A G T C G T A C C G T A A C G T A G C T C G T A A T C G C G T A A C T G A G T C A G T C A C G T A C G T G T C A
G C A T T G C A G A C T A T G C T C G A C G A T C A G T C T G A C A T G G C T A G T C A G T A C A C T G A G T C C G A T A C G T

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:2
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:TGCCATTAGAGCCTTA
-BCMATTAG-------
 A C G T A C T G A G T C G T A C C G T A A C G T A G C T C G T A A T C G C G T A A C T G A G T C A G T C A C G T A C G T G T C A
A C G T A C T G A G T C G T C A G T C A A C G T A G C T C G T A T C A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

BARX1/MA0875.1/Jaspar

Match Rank:3
Score:0.54
Offset:1
Orientation:forward strand
Alignment:TGCCATTAGAGCCTTA
-GCAATTAG-------
 A C G T A C T G A G T C G T A C C G T A A C G T A G C T C G T A A T C G C G T A A C T G A G T C A G T C A C G T A C G T G T C A
A C G T T C A G G A T C T G C A T G C A A C G T A C G T C G T A T C A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

HOXA5/MA0158.1/Jaspar

Match Rank:4
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:TGCCATTAGAGCCTTA
---AATTAGTG-----
 A C G T A C T G A G T C G T A C C G T A A C G T A G C T C G T A A T C G C G T A A C T G A G T C A G T C A C G T A C G T G T C A
A C G T A C G T A C G T T G C A C G T A A G C T C G A T G C T A T A C G G A C T A C T G A C G T A C G T A C G T A C G T A C G T

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:5
Score:0.52
Offset:0
Orientation:forward strand
Alignment:TGCCATTAGAGCCTTA
GGCCATTAAC------
 A C G T A C T G A G T C G T A C C G T A A C G T A G C T C G T A A T C G C G T A A C T G A G T C A G T C A C G T A C G T G T C A
C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C A C G T A C G T A C G T A C G T A C G T A C G T

BSX/MA0876.1/Jaspar

Match Rank:6
Score:0.51
Offset:1
Orientation:forward strand
Alignment:TGCCATTAGAGCCTTA
-CCAATTAA-------
 A C G T A C T G A G T C G T A C C G T A A C G T A G C T C G T A A T C G C G T A A C T G A G T C A G T C A C G T A C G T G T C A
A C G T T A G C G A T C T G C A T C G A A C G T C G A T C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

VENTX/MA0724.1/Jaspar

Match Rank:7
Score:0.50
Offset:0
Orientation:forward strand
Alignment:TGCCATTAGAGCCTTA
ACCGATTAG-------
 A C G T A C T G A G T C G T A C C G T A A C G T A G C T C G T A A T C G C G T A A C T G A G T C A G T C A C G T A C G T G T C A
C G T A T G A C G A T C T C A G G T C A A C G T A C G T C G T A C T A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

TFAP2B(var.3)/MA0813.1/Jaspar

Match Rank:8
Score:0.50
Offset:0
Orientation:forward strand
Alignment:TGCCATTAGAGCCTTA
TGCCCTGAGGGCA---
 A C G T A C T G A G T C G T A C C G T A A C G T A G C T C G T A A T C G C G T A A C T G A G T C A G T C A C G T A C G T G T C A
G C A T A T C G A G T C A G T C A G T C A G C T A C T G T C G A T C A G A C T G A C T G A T G C C G T A A C G T A C G T A C G T

YY2/MA0748.1/Jaspar

Match Rank:9
Score:0.50
Offset:-3
Orientation:forward strand
Alignment:---TGCCATTAGAGCCTTA
GTCCGCCATTA--------
 A C G T A C G T A C G T A C G T A C T G A G T C G T A C C G T A A C G T A G C T C G T A A T C G C G T A A C T G A G T C A G T C A C G T A C G T G T C A
C T A G C G A T G A T C A T G C T A C G T G A C A G T C C G T A C G A T G A C T C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NR1H2::RXRA/MA0115.1/Jaspar

Match Rank:10
Score:0.50
Offset:-2
Orientation:reverse strand
Alignment:--TGCCATTAGAGCCTTA
GTTGACCTTTGACCTTT-
 A C G T A C G T A C G T A C T G A G T C G T A C C G T A A C G T A G C T C G T A A T C G C G T A A C T G A G T C A G T C A C G T A C G T G T C A
T A C G G A C T A C G T A C T G C G T A A G T C A G T C A C G T C G A T A C G T A C T G C G T A G T A C A G T C A G C T G A C T C A G T A C G T