Information for 4-TTGTTATGAVAATAAT (Motif 5)

C G A T C A G T A C T G A C G T A C G T C G T A A C G T A C T G C G T A T C G A G T C A C G T A A C G T C T G A G C T A C G A T
Reverse Opposite:
C G T A C A G T G A C T T C G A A C G T A C G T A C G T A C G T A G T C G T C A C G A T G T C A G T C A T G A C G C T A C G T A
p-value:1e-12
log p-value:-2.830e+01
Information Content per bp:1.790
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif1.13%
Number of Background Sequences with motif1.5
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets42.0 +/- 27.6bp
Average Position of motif in Background80.0 +/- 7.5bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:1
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--TTGTTATGAVAATAAT
CATTGTTATGCAAAT---
 A C G T A C G T C G A T C A G T A C T G A C G T A C G T C G T A A C G T A C T G C G T A T C G A G T C A C G T A A C G T C T G A G C T A C G A T
G A T C G C T A G A C T C G A T A T C G C G A T G A C T C G T A C G A T C A T G A G T C C G T A C T G A C G T A C G A T A C G T A C G T A C G T

Pou5f1::Sox2/MA0142.1/Jaspar

Match Rank:2
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--TTGTTATGAVAATAAT
CTTTGTTATGCAAAT---
 A C G T A C G T C G A T C A G T A C T G A C G T A C G T C G T A A C G T A C T G C G T A T C G A G T C A C G T A A C G T C T G A G C T A C G A T
A G T C G C A T A G C T C A G T T A C G C G A T G A C T G C T A C G A T A C T G A G T C C G T A C T G A C T G A C A G T A C G T A C G T A C G T

PB0123.1_Foxl1_2/Jaspar

Match Rank:3
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----TTGTTATGAVAATAAT
NNTTTTGTTTTGATNT----
 A C G T A C G T A C G T A C G T C G A T C A G T A C T G A C G T A C G T C G T A A C G T A C T G C G T A T C G A G T C A C G T A A C G T C T G A G C T A C G A T
C A G T C A T G G A C T C A G T G C A T G C A T T C A G A C G T C A G T C G A T C A G T C T A G G C T A G C A T G C T A C G A T A C G T A C G T A C G T A C G T

PB0120.1_Foxj1_2/Jaspar

Match Rank:4
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---TTGTTATGAVAATAAT
GTNTTGTTGTGANNT----
 A C G T A C G T A C G T C G A T C A G T A C T G A C G T A C G T C G T A A C G T A C T G C G T A T C G A G T C A C G T A A C G T C T G A G C T A C G A T
C A T G A G C T T A C G G A C T G C A T A C T G A C G T G A C T C T A G A G C T A C T G T G C A A G T C T C G A C G A T A C G T A C G T A C G T A C G T

POU3F2/MA0787.1/Jaspar

Match Rank:5
Score:0.59
Offset:3
Orientation:forward strand
Alignment:TTGTTATGAVAATAAT
---TTATGCAAATTA-
 C G A T C A G T A C T G A C G T A C G T C G T A A C G T A C T G C G T A T C G A G T C A C G T A A C G T C T G A G C T A C G A T
A C G T A C G T A C G T C G A T G C A T T C G A G A C T C A T G A G T C G C T A C G T A G C T A C G A T A C G T G C T A A C G T

POU3F1/MA0786.1/Jaspar

Match Rank:6
Score:0.59
Offset:3
Orientation:forward strand
Alignment:TTGTTATGAVAATAAT
---TTATGCAAATTA-
 C G A T C A G T A C T G A C G T A C G T C G T A A C G T A C T G C G T A T C G A G T C A C G T A A C G T C T G A G C T A C G A T
A C G T A C G T A C G T C G A T G C A T C T G A G A C T C A T G A G T C C G T A C G T A C G T A C G A T C A G T G C T A A C G T

Pou2f3/MA0627.1/Jaspar

Match Rank:7
Score:0.58
Offset:1
Orientation:forward strand
Alignment:TTGTTATGAVAATAAT-
-TTGTATGCAAATTAGA
 C G A T C A G T A C T G A C G T A C G T C G T A A C G T A C T G C G T A T C G A G T C A C G T A A C G T C T G A G C T A C G A T A C G T
A C G T A C G T G C A T C A T G G A C T C G T A A G C T A C T G A G T C C G T A C G T A C G T A C A G T A C G T G T C A C T A G T G C A

PH0145.1_Pou2f3/Jaspar

Match Rank:8
Score:0.58
Offset:1
Orientation:forward strand
Alignment:TTGTTATGAVAATAAT-
-TTGTATGCAAATTAGA
 C G A T C A G T A C T G A C G T A C G T C G T A A C G T A C T G C G T A T C G A G T C A C G T A A C G T C T G A G C T A C G A T A C G T
A C G T A C G T G C A T C A T G G A C T C G T A A G C T A C T G A G T C C G T A C G T A C G T A C A G T A C G T G T C A C T A G T G C A

PH0144.1_Pou2f2/Jaspar

Match Rank:9
Score:0.58
Offset:1
Orientation:forward strand
Alignment:TTGTTATGAVAATAAT-
-TTGTATGCAAATTAGA
 C G A T C A G T A C T G A C G T A C G T C G T A A C G T A C T G C G T A T C G A G T C A C G T A A C G T C T G A G C T A C G A T A C G T
A C G T A G C T G C A T C A T G G C A T C G T A A G C T C A T G A G T C C G T A C G T A C G T A C G A T C A G T G C T A C T A G T G C A

PB0121.1_Foxj3_2/Jaspar

Match Rank:10
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----TTGTTATGAVAATAAT
NNCTTTGTTTTGNTNNN---
 A C G T A C G T A C G T A C G T C G A T C A G T A C T G A C G T A C G T C G T A A C G T A C T G C G T A T C G A G T C A C G T A A C G T C T G A G C T A C G A T
G C A T A T G C G T A C C G A T G C A T C G A T C T A G C G A T C A G T C G A T A C G T C T A G C A T G G A C T T A C G G C A T A C G T A C G T A C G T A C G T