Information for 25-CTTAAGCACT (Motif 43)

A G T C A G C T C A G T T C G A C T G A C A T G T G A C C G T A A T G C G A C T
Reverse Opposite:
C T G A A T C G C G A T A C T G G T A C G A C T A G C T G T C A T C G A T C A G
p-value:1e-6
log p-value:-1.569e+01
Information Content per bp:1.539
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.84%
Number of Background Sequences with motif3.0
Percentage of Background Sequences with motif0.07%
Average Position of motif in Targets36.0 +/- 19.3bp
Average Position of motif in Background69.5 +/- 20.2bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0112.1_Nkx2-3/Jaspar

Match Rank:1
Score:0.75
Offset:-1
Orientation:forward strand
Alignment:-CTTAAGCACT-----
CTTTAAGTACTTAATG
 A C G T A G T C A G C T C A G T T C G A C T G A C A T G T G A C C G T A A T G C G A C T A C G T A C G T A C G T A C G T A C G T
G A T C A G C T A G C T G C A T C T G A C T G A A T C G A G C T C T G A A T G C G A C T G A C T T C G A C T G A G A C T C T A G

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:2
Score:0.72
Offset:3
Orientation:forward strand
Alignment:CTTAAGCACT---
---AAGCACTTAA
 A G T C A G C T C A G T T C G A C T G A C A T G T G A C C G T A A T G C G A C T A C G T A C G T A C G T
A C G T A C G T A C G T T C G A T C G A T A C G G A T C G T C A G T A C C G A T A G C T G T C A T G C A

PH0117.1_Nkx3-1/Jaspar

Match Rank:3
Score:0.70
Offset:-2
Orientation:reverse strand
Alignment:--CTTAAGCACT-----
NATTTAAGTACTTANNA
 A C G T A C G T A G T C A G C T C A G T T C G A C T G A C A T G T G A C C G T A A T G C G A C T A C G T A C G T A C G T A C G T A C G T
T A G C G C T A C G A T G A C T C G A T C T G A C T G A A T C G A G C T T C G A A T G C G A C T G A C T G C T A C T A G G C A T G C T A

PH0116.1_Nkx2-9/Jaspar

Match Rank:4
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--CTTAAGCACT-----
NATTTAAGTACTTNAAA
 A C G T A C G T A G T C A G C T C A G T T C G A C T G A C A T G T G A C C G T A A T G C G A C T A C G T A C G T A C G T A C G T A C G T
C T G A G C T A C G A T G C A T A G C T C T G A C T G A A T C G A G C T C T G A A T G C G A C T G A C T G C T A C G T A C T G A G C T A

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:5
Score:0.67
Offset:3
Orientation:reverse strand
Alignment:CTTAAGCACT---
---MRSCACTYAA
 A G T C A G C T C A G T T C G A C T G A C A T G T G A C C G T A A T G C G A C T A C G T A C G T A C G T
A C G T A C G T A C G T G T C A C T G A T A G C A G T C C G T A G T A C G C A T A G T C C T G A T C G A

PB0099.1_Zfp691_1/Jaspar

Match Rank:6
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--CTTAAGCACT-----
NNNNTGAGCACTGTNNG
 A C G T A C G T A G T C A G C T C A G T T C G A C T G A C A T G T G A C C G T A A T G C G A C T A C G T A C G T A C G T A C G T A C G T
G C T A G A C T C G T A T C A G A C G T A C T G C T G A A C T G A G T C C G T A G T A C A G C T C A T G A G C T C A G T G T A C T C A G

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:7
Score:0.65
Offset:3
Orientation:forward strand
Alignment:CTTAAGCACT---
---AASCACTCAA
 A G T C A G C T C A G T T C G A C T G A C A T G T G A C C G T A A T G C G A C T A C G T A C G T A C G T
A C G T A C G T A C G T C T G A C T G A T A G C G A T C G C T A G T A C A C G T G A T C T G C A C G T A

PH0004.1_Nkx3-2/Jaspar

Match Rank:8
Score:0.64
Offset:0
Orientation:forward strand
Alignment:CTTAAGCACT-------
CATAACCACTTAACAAC
 A G T C A G C T C A G T T C G A C T G A C A T G T G A C C G T A A T G C G A C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
T G A C G C T A C G A T T C G A G C T A T A G C A G T C C G T A G T A C A G C T A G C T G C T A C G T A T A G C T G C A G T C A G A T C

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:9
Score:0.62
Offset:4
Orientation:forward strand
Alignment:CTTAAGCACT----
----RSCACTYRAG
 A G T C A G C T C A G T T C G A C T G A C A T G T G A C C G T A A T G C G A C T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C T A G T A C G A G T C C G T A A G T C A C G T A G T C T C G A C G T A T A C G

NKX2-3/MA0672.1/Jaspar

Match Rank:10
Score:0.60
Offset:4
Orientation:forward strand
Alignment:CTTAAGCACT----
----ACCACTTGAA
 A G T C A G C T C A G T T C G A C T G A C A T G T G A C C G T A A T G C G A C T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T G C A T A G C G A T C G C T A G T A C A C G T A G C T T C A G C G T A T C G A