Information for 10-GAGACGCACT (Motif 25)

A C T G C T G A A T C G C T G A A T G C A T C G A G T C G T C A T A G C A G C T
Reverse Opposite:
C T G A A C T G A C G T A C T G A T G C A T C G A G C T A T G C A G C T A G T C
p-value:1e-10
log p-value:-2.432e+01
Information Content per bp:1.847
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.32%
Number of Background Sequences with motif3.7
Percentage of Background Sequences with motif0.08%
Average Position of motif in Targets49.3 +/- 27.0bp
Average Position of motif in Background77.8 +/- 14.6bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:1
Score:0.58
Offset:3
Orientation:forward strand
Alignment:GAGACGCACT---
---AAGCACTTAA
 A C T G C T G A A T C G C T G A A T G C A T C G A G T C G T C A T A G C A G C T A C G T A C G T A C G T
A C G T A C G T A C G T T C G A T C G A T A C G G A T C G T C A G T A C C G A T A G C T G T C A T G C A

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:2
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:GAGACGCACT---
---MRSCACTYAA
 A C T G C T G A A T C G C T G A A T G C A T C G A G T C G T C A T A G C A G C T A C G T A C G T A C G T
A C G T A C G T A C G T G T C A C T G A T A G C A G T C C G T A G T A C G C A T A G T C C T G A T C G A

ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:3
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-GAGACGCACT
TGGGGCCCAC-
 A C G T A C T G C T G A A T C G C T G A A T G C A T C G A G T C G T C A T A G C A G C T
G A C T C T A G A C T G A C T G T A C G A G T C A G T C A G T C C T G A A T G C A C G T

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:4
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:GAGACGCACT
--CACGCA--
 A C T G C T G A A T C G C T G A A T G C A T C G A G T C G T C A T A G C A G C T
A C G T A C G T A G T C C G T A G T A C C T A G G T A C C T G A A C G T A C G T

PB0160.1_Rfxdc2_2/Jaspar

Match Rank:5
Score:0.56
Offset:-7
Orientation:forward strand
Alignment:-------GAGACGCACT
CTACTTGGATACGGAAT
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G C T G A A T C G C T G A A T G C A T C G A G T C G T C A T A G C A G C T
A T G C A C G T T C G A A T G C C A G T G A C T T C A G A C T G C G T A A C G T C G T A G A T C T A C G T A C G C G T A C G T A G C A T

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:6
Score:0.56
Offset:3
Orientation:forward strand
Alignment:GAGACGCACT---
---AASCACTCAA
 A C T G C T G A A T C G C T G A A T G C A T C G A G T C G T C A T A G C A G C T A C G T A C G T A C G T
A C G T A C G T A C G T C T G A C T G A T A G C G A T C G C T A G T A C A C G T G A T C T G C A C G T A

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:7
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-GAGACGCACT
TBGCACGCAA-
 A C G T A C T G C T G A A T C G C T G A A T G C A T C G A G T C G T C A T A G C A G C T
G C A T A T C G C A T G G T A C G C T A A G T C T C A G T G A C G T C A T G C A A C G T

PB0151.1_Myf6_2/Jaspar

Match Rank:8
Score:0.56
Offset:-5
Orientation:forward strand
Alignment:-----GAGACGCACT
AGCAACAGCCGCACC
 A C G T A C G T A C G T A C G T A C G T A C T G C T G A A T C G C T G A A T G C A T C G A G T C G T C A T A G C A G C T
T C G A T A C G T G A C T C G A T G C A G A T C T C G A C T A G T G A C T A G C A T C G T A G C C T G A T G A C G A T C

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-GAGACGCACT
CCAGACRSVB-
 A C G T A C T G C T G A A T C G C T G A A T G C A T C G A G T C G T C A T A G C A G C T
T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T

PB0143.1_Klf7_2/Jaspar

Match Rank:10
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---GAGACGCACT----
AAGCATACGCCCAACTT
 A C G T A C G T A C G T A C T G C T G A A T C G C T G A A T G C A T C G A G T C G T C A T A G C A G C T A C G T A C G T A C G T A C G T
T G C A T C G A C T A G A G T C C G T A C G A T G T C A A G T C C T A G T A G C T A G C G A T C G T C A C G T A G T A C G C A T C A G T