Information for 10-TCTKTCWSGCWGC (Motif 20)

A C G T A G T C A C G T A C G T A C G T G T A C G C T A A T G C A C T G A G T C C G A T A C T G A G T C
Reverse Opposite:
A C T G A G T C C G T A A C T G A G T C T A C G C G A T A C T G C G T A G T C A C G T A A C T G C G T A
p-value:1e-8
log p-value:-1.942e+01
Information Content per bp:1.872
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.58%
Number of Background Sequences with motif3.4
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets53.8 +/- 29.2bp
Average Position of motif in Background55.3 +/- 29.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:1
Score:0.59
Offset:1
Orientation:forward strand
Alignment:TCTKTCWSGCWGC-
-CTGTCTGTCACCT
 A C G T A G T C A C G T A C G T A C G T G T A C G C T A A T G C A C T G A G T C C G A T A C T G A G T C A C G T
A C G T T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:2
Score:0.57
Offset:1
Orientation:forward strand
Alignment:TCTKTCWSGCWGC--
-CTGGCAGNCTGCCA
 A C G T A G T C A C G T A C G T A C G T G T A C G C T A A T G C A C T G A G T C C G A T A C T G A G T C A C G T A C G T
A C G T A G T C C G A T A C T G A T C G T G A C G C T A C A T G A T C G T G A C C G A T A C T G T A G C G T A C G T C A

E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer

Match Rank:3
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:TCTKTCWSGCWGC
-NYTTCCCGCC--
 A C G T A G T C A C G T A C G T A C G T G T A C G C T A A T G C A C T G A G T C C G A T A C T G A G T C
A C G T T A G C A G C T G A C T A G C T A T G C T G A C T A G C C A T G A T G C A T G C A C G T A C G T

PB0207.1_Zic3_2/Jaspar

Match Rank:4
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:TCTKTCWSGCWGC----
--NNTCCTGCTGTGNNN
 A C G T A G T C A C G T A C G T A C G T G T A C G C T A A T G C A C T G A G T C C G A T A C T G A G T C A C G T A C G T A C G T A C G T
A C G T A C G T G C A T A T C G C A G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G G A C T A C T G G A T C G C A T G T A C

PB0206.1_Zic2_2/Jaspar

Match Rank:5
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:TCTKTCWSGCWGC----
--TCNCCTGCTGNGNNN
 A C G T A G T C A C G T A C G T A C G T G T A C G C T A A T G C A C T G A G T C C G A T A C T G A G T C A C G T A C G T A C G T A C G T
A C G T A C G T G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:6
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-TCTKTCWSGCWGC
GSCTGTCACTCA--
 A C G T A C G T A G T C A C G T A C G T A C G T G T A C G C T A A T G C A C T G A G T C C G A T A C T G A G T C
C T A G A T G C A T G C C G A T A C T G G A C T A T G C G C T A T G A C A G C T T A G C G C T A A C G T A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:TCTKTCWSGCWGC-
--TGTCTGDCACCT
 A C G T A G T C A C G T A C G T A C G T G T A C G C T A A T G C A C T G A G T C C G A T A C T G A G T C A C G T
A C G T A C G T G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.53
Offset:1
Orientation:forward strand
Alignment:TCTKTCWSGCWGC
-CTGTCTGG----
 A C G T A G T C A C G T A C G T A C G T G T A C G C T A A T G C A C T G A G T C C G A T A C T G A G T C
A C G T A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T A C G T A C G T

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:9
Score:0.52
Offset:2
Orientation:forward strand
Alignment:TCTKTCWSGCWGC
--TBGCACGCAA-
 A C G T A G T C A C G T A C G T A C G T G T A C G C T A A T G C A C T G A G T C C G A T A C T G A G T C
A C G T A C G T G C A T A T C G C A T G G T A C G C T A A G T C T C A G T G A C G T C A T G C A A C G T

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:10
Score:0.52
Offset:0
Orientation:forward strand
Alignment:TCTKTCWSGCWGC
NCTGTCAATCAN-
 A C G T A G T C A C G T A C G T A C G T G T A C G C T A A T G C A C T G A G T C C G A T A C T G A G T C
T A G C T A G C G A C T C T A G A G C T A G T C G T C A T G C A A C G T A T G C G C T A T G C A A C G T