Information for 6-GKCCACAGCAGAG (Motif 10)

C T A G A C G T A T G C A G T C C T G A T A G C C G T A A T C G A G T C G T C A A C T G T G C A A C T G
Reverse Opposite:
A G T C A C G T A G T C A C G T T A C G A T G C A C G T A T C G A G C T A C T G A T C G G T C A A G T C
p-value:1e-10
log p-value:-2.490e+01
Information Content per bp:1.810
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.38%
Number of Background Sequences with motif40.0
Percentage of Background Sequences with motif0.08%
Average Position of motif in Targets47.2 +/- 28.3bp
Average Position of motif in Background50.9 +/- 28.5bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.68
Offset:3
Orientation:forward strand
Alignment:GKCCACAGCAGAG--
---CACAGCAGGGGG
 C T A G A C G T A T G C A G T C C T G A T A G C C G T A A T C G A G T C G T C A A C T G T G C A A C T G A C G T A C G T
A C G T A C G T A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:2
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:GKCCACAGCAGAG----
--DCHCAGCAGGRGGCC
 C T A G A C G T A T G C A G T C C T G A T A G C C G T A A T C G A G T C G T C A A C T G T G C A A C T G A C G T A C G T A C G T A C G T
A C G T A C G T C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

POL009.1_DCE_S_II/Jaspar

Match Rank:3
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:GKCCACAGCAGAG
---CACAGN----
 C T A G A C G T A T G C A G T C C T G A T A G C C G T A A T C G A G T C G T C A A C T G T G C A A C T G
A C G T A C G T A C G T T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T A C G T

RUNX1/MA0002.2/Jaspar

Match Rank:4
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-GKCCACAGCAGAG
AAACCACAGAN---
 A C G T C T A G A C G T A T G C A G T C C T G A T A G C C G T A A T C G A G T C G T C A A C T G T G C A A C T G
G C T A C T G A T C G A T G A C G T A C C T G A T A G C G C T A T C A G T C G A T G A C A C G T A C G T A C G T

ZIC1/MA0696.1/Jaspar

Match Rank:5
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:GKCCACAGCAGAG----
---CACAGCGGGGGGTC
 C T A G A C G T A T G C A G T C C T G A T A G C C G T A A T C G A G T C G T C A A C T G T G C A A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T G A C C T G A A G T C T G C A T C A G A G T C C T A G C A T G T C A G C A T G C A T G C A T G A G C T T G A C

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:6
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-GKCCACAGCAGAG
AAACCACAGC----
 A C G T C T A G A C G T A T G C A G T C C T G A T A G C C G T A A T C G A G T C G T C A A C T G T G C A A C T G
G C T A T C G A T G C A T G A C G T A C T G C A A G T C C T G A C T A G T G A C A C G T A C G T A C G T A C G T

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:7
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--GKCCACAGCAGAG
NWAACCACADNN---
 A C G T A C G T C T A G A C G T A T G C A G T C C T G A T A G C C G T A A T C G A G T C G T C A A C T G T G C A A C T G
T G A C G C T A T C G A T G C A A G T C A G T C C G T A A G T C C G T A C T G A G C T A G T A C A C G T A C G T A C G T

PB0207.1_Zic3_2/Jaspar

Match Rank:8
Score:0.56
Offset:0
Orientation:forward strand
Alignment:GKCCACAGCAGAG--
GAGCACAGCAGGACA
 C T A G A C G T A T G C A G T C C T G A T A G C C G T A A T C G A G T C G T C A A C T G T G C A A C T G A C G T A C G T
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A

NHLH1/MA0048.2/Jaspar

Match Rank:9
Score:0.56
Offset:3
Orientation:forward strand
Alignment:GKCCACAGCAGAG
---CGCAGCTGCG
 C T A G A C G T A T G C A G T C C T G A T A G C C G T A A T C G A G T C G T C A A C T G T G C A A C T G
A C G T A C G T A C G T T G A C T C A G G T A C T G C A A T C G T A G C A C G T T A C G G A T C A C T G

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:10
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--GKCCACAGCAGAG
NAAACCACAG-----
 A C G T A C G T C T A G A C G T A T G C A G T C C T G A T A G C C G T A A T C G A G T C G T C A A C T G T G C A A C T G
T A G C G C T A T C G A C T G A A G T C A G T C C T G A A G T C C G T A C T A G A C G T A C G T A C G T A C G T A C G T