Information for 17-GAAGACGGAT (Motif 17)

A C T G G T C A C G T A A C T G T C G A A T G C A C T G C T A G C T G A A G C T
Reverse Opposite:
C T G A G A C T A G T C G T A C A T C G A G C T A G T C A C G T A C G T A G T C
p-value:1e-10
log p-value:-2.410e+01
Information Content per bp:1.831
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.17%
Number of Background Sequences with motif28.9
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets49.3 +/- 27.6bp
Average Position of motif in Background51.2 +/- 35.9bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL008.1_DCE_S_I/Jaspar

Match Rank:1
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-GAAGACGGAT
NGAAGC-----
 A C G T A C T G G T C A C G T A A C T G T C G A A T G C A C T G C T A G C T G A A G C T
T A C G T A C G T G C A T C G A T A C G T G A C A C G T A C G T A C G T A C G T A C G T

PB0124.1_Gabpa_2/Jaspar

Match Rank:2
Score:0.64
Offset:-8
Orientation:reverse strand
Alignment:--------GAAGACGGAT
NNNNGGGGGAAGANGG--
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G G T C A C G T A A C T G T C G A A T G C A C T G C T A G C T G A A G C T
C T A G A C G T A T C G T C G A C T A G C A T G T A C G C T A G C T A G C T G A C G T A C T A G T G C A G A T C C T A G A C T G A C G T A C G T

PROX1/MA0794.1/Jaspar

Match Rank:3
Score:0.61
Offset:0
Orientation:forward strand
Alignment:GAAGACGGAT--
CAAGACGCCTTA
 A C T G G T C A C G T A A C T G T C G A A T G C A C T G C T A G C T G A A G C T A C G T A C G T
A G T C C T G A G C T A C T A G T C G A G A T C C A T G G A T C A G T C C A G T A G C T T C G A

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:GAAGACGGAT
CCAGACRSVB
 A C T G G T C A C G T A A C T G T C G A A T G C A C T G C T A G C T G A A G C T
T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:GAAGACGGAT
CCAGACAG--
 A C T G G T C A C G T A A C T G T C G A A T G C A C T G C T A G C T G A A G C T
A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T

Atf3/MA0605.1/Jaspar

Match Rank:6
Score:0.59
Offset:0
Orientation:forward strand
Alignment:GAAGACGGAT
GATGACGT--
 A C T G G T C A C G T A A C T G T C G A A T G C A C T G C T A G C T G A A G C T
A T C G C T G A A C G T A C T G C G T A A G T C C T A G G A C T A C G T A C G T

PB0108.1_Atf1_2/Jaspar

Match Rank:7
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-GAAGACGGAT---
GAATGACGAATAAC
 A C G T A C T G G T C A C G T A A C T G T C G A A T G C A C T G C T A G C T G A A G C T A C G T A C G T A C G T
T A C G C T G A T C G A A C G T C T A G C G T A A G T C C T A G G T C A C T G A A G C T C G T A C G T A G T A C

MF0001.1_ETS_class/Jaspar

Match Rank:8
Score:0.55
Offset:-4
Orientation:forward strand
Alignment:----GAAGACGGAT
ACCGGAAG------
 A C G T A C G T A C G T A C G T A C T G G T C A C G T A A C T G T C G A A T G C A C T G C T A G C T G A A G C T
C T G A T A G C T G A C C A T G C T A G C T G A G C T A T C A G A C G T A C G T A C G T A C G T A C G T A C G T

PB0106.1_Arid5a_2/Jaspar

Match Rank:9
Score:0.54
Offset:-4
Orientation:forward strand
Alignment:----GAAGACGGAT---
CATACAATACGAAATAA
 A C G T A C G T A C G T A C G T A C T G G T C A C G T A A C T G T C G A A T G C A C T G C T A G C T G A A G C T A C G T A C G T A C G T
A T G C C T A G G A C T C G T A T G A C C G T A T G C A A C G T T G C A T A G C T A C G C T G A C T G A C G T A A G C T T C G A T C G A

PB0077.1_Spdef_1/Jaspar

Match Rank:10
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--GAAGACGGAT----
AANNATCCGGATGTNN
 A C G T A C G T A C T G G T C A C G T A A C T G T C G A A T G C A C T G C T A G C T G A A G C T A C G T A C G T A C G T A C G T
T C G A C T G A C T G A C G T A C G T A G A C T T A G C T G A C A C T G A C T G C G T A G C A T T C A G G A C T C T G A A G T C