Information for 3-CACACADTAVVCA (Motif 5)

A G T C C G T A A T G C C G T A A T G C C G T A C T A G A C G T G T C A T C G A T A C G A G T C C G T A
Reverse Opposite:
A C G T A C T G A G T C A C G T A C G T C G T A G A C T A C G T A T C G A C G T A T C G A C G T A C T G
p-value:1e-7
log p-value:-1.738e+01
Information Content per bp:1.793
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif1.91%
Number of Background Sequences with motif15.7
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets50.8 +/- 24.9bp
Average Position of motif in Background50.6 +/- 31.9bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.20
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0177.1_Sox7_2/Jaspar

Match Rank:1
Score:0.62
Offset:-8
Orientation:reverse strand
Alignment:--------CACACADTAVVCA-
NNCNNNCNCANACAATTAGNAC
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A A T G C C G T A A T G C C G T A C T A G A C G T G T C A T C G A T A C G A G T C C G T A A C G T
T C G A A T C G T G A C C A T G A G C T G T C A A G T C C G T A A T G C C T G A A T G C C G T A A G T C C G T A C G T A G C A T C A G T G C T A T A C G A T G C G C T A T G A C

PB0208.1_Zscan4_2/Jaspar

Match Rank:2
Score:0.61
Offset:-5
Orientation:forward strand
Alignment:-----CACACADTAVVCA
CGAAGCACACAAAATA--
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A A T G C C G T A A T G C C G T A C T A G A C G T G T C A T C G A T A C G A G T C C G T A
G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A A C G T A C G T

PB0130.1_Gm397_2/Jaspar

Match Rank:3
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----CACACADTAVVCA
AGCGGCACACACGCAA--
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A A T G C C G T A A T G C C G T A C T A G A C G T G T C A T C G A T A C G A G T C C G T A
C T G A T C A G G T A C T C A G C T A G T G A C C T G A G A T C T C G A A T G C T G C A G T A C A C T G G A T C T G C A G T C A A C G T A C G T

FOXH1/MA0479.1/Jaspar

Match Rank:4
Score:0.60
Offset:2
Orientation:forward strand
Alignment:CACACADTAVVCA
--TCCAATCCACA
 A G T C C G T A A T G C C G T A A T G C C G T A C T A G A C G T G T C A T C G A T A C G A G T C C G T A
A C G T A C G T A G C T A G T C T A G C C G T A C G T A A C G T G T A C G T A C C G T A A G T C C G T A

PB0168.1_Sox14_2/Jaspar

Match Rank:5
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--CACACADTAVVCA
CTCACACAATGGCGC
 A C G T A C G T A G T C C G T A A T G C C G T A A T G C C G T A C T A G A C G T G T C A T C G A T A C G A G T C C G T A
A G T C A C G T A G T C T C G A T A G C C G T A A T G C G T C A G T C A G C A T C T A G T C A G G T A C A C T G A T G C

PB0060.1_Smad3_1/Jaspar

Match Rank:6
Score:0.59
Offset:-6
Orientation:forward strand
Alignment:------CACACADTAVVCA
CAAATCCAGACATCACA--
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A A T G C C G T A A T G C C G T A C T A G A C G T G T C A T C G A T A C G A G T C C G T A
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A A C G T A C G T

Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:CACACADTAVVCA--
---SSAATCCACANN
 A G T C C G T A A T G C C G T A A T G C C G T A C T A G A C G T G T C A T C G A T A C G A G T C C G T A A C G T A C G T
A C G T A C G T A C G T A T G C T A G C C T G A C G T A A C G T G T A C G T A C C T G A A G T C C G T A C T G A G T A C

Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:8
Score:0.57
Offset:-5
Orientation:reverse strand
Alignment:-----CACACADTAVVCA
ATTTGCATACAATGG---
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A A T G C C G T A A T G C C G T A C T A G A C G T G T C A T C G A T A C G A G T C C G T A
G T C A A G C T G A C T C G A T T C A G T G A C C G T A G A C T C G T A A T G C C G T A C G T A C G A T C T A G T C A G A C G T A C G T A C G T

Sox17/MA0078.1/Jaspar

Match Rank:9
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:CACACADTAVVCA
--GACAATGNN--
 A G T C C G T A A T G C C G T A A T G C C G T A C T A G A C G T G T C A T C G A T A C G A G T C C G T A
A C G T A C G T T A C G G T C A A G T C C G T A C T G A C G A T C T A G C G T A C T A G A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-CACACADTAVVCA
CCAGACAG------
 A C G T A G T C C G T A A T G C C G T A A T G C C G T A C T A G A C G T G T C A T C G A T A C G A G T C C G T A
A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T