Information for 8-AGKCTGGCTGAGC (Motif 20)

C T G A T A C G A C G T A T G C C G A T C T A G C A T G A T G C A G C T A T C G T G C A T A C G A T G C
Reverse Opposite:
T A C G A T G C A C G T T A G C T C G A T A C G G A T C A G T C G C T A T A C G T G C A A T G C G A C T
p-value:1e-5
log p-value:-1.332e+01
Information Content per bp:1.658
Number of Target Sequences with motif31.0
Percentage of Target Sequences with motif3.29%
Number of Background Sequences with motif588.8
Percentage of Background Sequences with motif1.24%
Average Position of motif in Targets49.8 +/- 26.2bp
Average Position of motif in Background50.8 +/- 28.3bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0164.1_Smad3_2/Jaspar

Match Rank:1
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-AGKCTGGCTGAGC---
NAGANTGGCGGGGNGNA
 A C G T C T G A T A C G A C G T A T G C C G A T C T A G C A T G A T G C A G C T A T C G T G C A T A C G A T G C A C G T A C G T A C G T
T G A C C T G A T C A G C T G A C A T G A C G T C A T G T C A G A T G C T A C G A T C G T C A G C T A G T A G C C A T G C A G T G T C A

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:2
Score:0.59
Offset:0
Orientation:forward strand
Alignment:AGKCTGGCTGAGC
GGTCTGGCAT---
 C T G A T A C G A C G T A T G C C G A T C T A G C A T G A T G C A G C T A T C G T G C A T A C G A T G C
A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T A C G T A C G T A C G T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:3
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----AGKCTGGCTGAGC
GTCATGCHTGRCTGS--
 A C G T A C G T A C G T A C G T C T G A T A C G A C G T A T G C C G A T C T A G C A T G A T G C A G C T A T C G T G C A T A C G A T G C
A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:4
Score:0.58
Offset:3
Orientation:forward strand
Alignment:AGKCTGGCTGAGC
---TWGTCTGV--
 C T G A T A C G A C G T A T G C C G A T C T A G C A T G A T G C A G C T A T C G T G C A T A C G A T G C
A C G T A C G T A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:5
Score:0.58
Offset:3
Orientation:forward strand
Alignment:AGKCTGGCTGAGC
---CCTGCTGAGH
 C T G A T A C G A C G T A T G C C G A T C T A G C A T G A T G C A G C T A T C G T G C A T A C G A T G C
A C G T A C G T A C G T A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:6
Score:0.58
Offset:4
Orientation:forward strand
Alignment:AGKCTGGCTGAGC-
----WDNCTGGGCA
 C T G A T A C G A C G T A T G C C G A T C T A G C A T G A T G C A G C T A T C G T G C A T A C G A T G C A C G T
A C G T A C G T A C G T A C G T G C A T C T A G G T A C A G T C C G A T A C T G C T A G C T A G G T A C G C T A

PB0060.1_Smad3_1/Jaspar

Match Rank:7
Score:0.57
Offset:-5
Orientation:reverse strand
Alignment:-----AGKCTGGCTGAGC
NNTNNTGTCTGGNNTNG-
 A C G T A C G T A C G T A C G T A C G T C T G A T A C G A C G T A T G C C G A T C T A G C A T G A T G C A G C T A T C G T G C A T A C G A T G C
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G A C G T

PB0207.1_Zic3_2/Jaspar

Match Rank:8
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:AGKCTGGCTGAGC--
NNTCCTGCTGTGNNN
 C T G A T A C G A C G T A T G C C G A T C T A G C A T G A T G C A G C T A T C G T G C A T A C G A T G C A C G T A C G T
G C A T A T C G C A G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G G A C T A C T G G A T C G C A T G T A C

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-AGKCTGGCTGAGC
CTGTCTGG------
 A C G T C T G A T A C G A C G T A T G C C G A T C T A G C A T G A T G C A G C T A T C G T G C A T A C G A T G C
A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T A C G T A C G T A C G T A C G T

ESR2/MA0258.2/Jaspar

Match Rank:10
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-AGKCTGGCTGAGC-
AGGNCANNGTGACCT
 A C G T C T G A T A C G A C G T A T G C C G A T C T A G C A T G A T G C A G C T A T C G T G C A T A C G A T G C A C G T
C T G A C T A G C T A G C A G T A G T C C G T A A T C G A C T G T A C G G C A T T A C G T G C A G A T C G T A C G A C T