Information for 6-GAACAAAGGCBGG (Motif 6)

A C T G C G T A C G T A A G T C C G T A C G T A C G T A A C T G C T A G A G T C A T C G A C T G A C T G
Reverse Opposite:
A G T C G T A C T A G C A C T G A G T C A G T C G C A T A C G T A C G T A C T G C G A T A C G T A G T C
p-value:1e-13
log p-value:-3.139e+01
Information Content per bp:1.869
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.77%
Number of Background Sequences with motif2.2
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets66.3 +/- 16.1bp
Average Position of motif in Background74.4 +/- 15.7bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:1
Score:0.80
Offset:0
Orientation:reverse strand
Alignment:GAACAAAGGCBGG
GAACAATGGN---
 A C T G C G T A C G T A A G T C C G T A C G T A C G T A A C T G C T A G A G T C A T C G A C T G A C T G
C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G A C G T A C G T A C G T

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:2
Score:0.79
Offset:-1
Orientation:reverse strand
Alignment:-GAACAAAGGCBGG
GGAACAAAGR----
 A C G T A C T G C G T A C G T A A G T C C G T A C G T A C G T A A C T G C T A G A G T C A T C G A C T G A C T G
T C A G T C A G T C G A C G T A A G T C C G T A C G T A C G T A A C T G T C A G A C G T A C G T A C G T A C G T

Sox2/MA0143.3/Jaspar

Match Rank:3
Score:0.76
Offset:1
Orientation:reverse strand
Alignment:GAACAAAGGCBGG
-AACAAAGG----
 A C T G C G T A C G T A A G T C C G T A C G T A C G T A A C T G C T A G A G T C A T C G A C T G A C T G
A C G T T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G A C G T A C G T A C G T A C G T

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:4
Score:0.74
Offset:0
Orientation:forward strand
Alignment:GAACAAAGGCBGG
RAACAATGGN---
 A C T G C G T A C G T A A G T C C G T A C G T A C G T A A C T G C T A G A G T C A T C G A C T G A C T G
C T G A T C G A C G T A A T G C C G T A C G T A C G A T C T A G T C A G G A T C A C G T A C G T A C G T

PB0061.1_Sox11_1/Jaspar

Match Rank:5
Score:0.74
Offset:-4
Orientation:forward strand
Alignment:----GAACAAAGGCBGG
ATAAGAACAAAGGACTA
 A C G T A C G T A C G T A C G T A C T G C G T A C G T A A G T C C G T A C G T A C G T A A C T G C T A G A G T C A T C G A C T G A C T G
G C T A A C G T C G T A C G T A C T A G T C G A C G T A A G T C C G T A G T C A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:6
Score:0.74
Offset:1
Orientation:reverse strand
Alignment:GAACAAAGGCBGG
-RACAAWGG----
 A C T G C G T A C G T A A G T C C G T A C G T A C G T A A C T G C T A G A G T C A T C G A C T G A C T G
A C G T T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T A C G T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:7
Score:0.73
Offset:-1
Orientation:reverse strand
Alignment:-GAACAAAGGCBGG
VRRACAAWGG----
 A C G T A C T G C G T A C G T A A G T C C G T A C G T A C G T A A C T G C T A G A G T C A T C G A C T G A C T G
T A G C C T A G T C G A C G T A A G T C C G T A C T G A C G T A C T A G T A C G A C G T A C G T A C G T A C G T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:8
Score:0.73
Offset:-1
Orientation:reverse strand
Alignment:-GAACAAAGGCBGG
VRAACAATGG----
 A C G T A C T G C G T A C G T A A G T C C G T A C G T A C G T A A C T G C T A G A G T C A T C G A C T G A C T G
T G A C C T G A T C G A C G T A T A G C G T C A T C G A G C A T C T A G T A C G A C G T A C G T A C G T A C G T

PB0071.1_Sox4_1/Jaspar

Match Rank:9
Score:0.73
Offset:-4
Orientation:forward strand
Alignment:----GAACAAAGGCBGG
AGAAGAACAAAGGACTA
 A C G T A C G T A C G T A C G T A C T G C G T A C G T A A G T C C G T A C G T A C G T A A C T G C T A G A G T C A T C G A C T G A C T G
G T C A A C T G C T G A C G T A C T A G T C G A C G T A A G T C C G T A C G T A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

Sox3/MA0514.1/Jaspar

Match Rank:10
Score:0.73
Offset:-1
Orientation:reverse strand
Alignment:-GAACAAAGGCBGG
AAAACAAAGG----
 A C G T A C T G C G T A C G T A A G T C C G T A C G T A C G T A A C T G C T A G A G T C A T C G A C T G A C T G
T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T A C G T