Information for 2-YNKGGRAATTCCC (Motif 3)

A G T C T G A C C A T G A C T G A C T G C T G A G T C A C G T A A C G T A G C T A G T C A G T C G T A C
Reverse Opposite:
C A T G A C T G C T A G C T G A T G C A G C A T A C G T A G C T A G T C G T A C G T A C A C T G T C A G
p-value:1e-30
log p-value:-6.964e+01
Information Content per bp:1.649
Number of Target Sequences with motif61.0
Percentage of Target Sequences with motif6.73%
Number of Background Sequences with motif463.2
Percentage of Background Sequences with motif0.98%
Average Position of motif in Targets46.5 +/- 23.7bp
Average Position of motif in Background49.7 +/- 29.3bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:1
Score:0.93
Offset:3
Orientation:forward strand
Alignment:YNKGGRAATTCCC
---GGAAATTCCC
 A G T C T G A C C A T G A C T G A C T G C T G A G T C A C G T A A C G T A G C T A G T C A G T C G T A C
A C G T A C G T A C G T A C T G C A T G G C T A T C G A G C T A A G C T A G C T G T A C A G T C T G A C

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:2
Score:0.92
Offset:1
Orientation:forward strand
Alignment:YNKGGRAATTCCC
-NGGGGATTTCCC
 A G T C T G A C C A T G A C T G A C T G C T G A G T C A C G T A A C G T A G C T A G T C A G T C G T A C
A C G T C G T A C A T G C A T G A C T G C T A G T C G A G C A T C G A T A G C T A G T C G A T C G T A C

RELA/MA0107.1/Jaspar

Match Rank:3
Score:0.92
Offset:3
Orientation:reverse strand
Alignment:YNKGGRAATTCCC
---GGAAATTCCC
 A G T C T G A C C A T G A C T G A C T G C T G A G T C A C G T A A C G T A G C T A G T C A G T C G T A C
A C G T A C G T A C G T A C T G A C T G C T G A C G T A C G T A A G C T A G C T A G T C G T A C T A G C

MF0003.1_REL_class/Jaspar

Match Rank:4
Score:0.90
Offset:3
Orientation:reverse strand
Alignment:YNKGGRAATTCCC
---GGAAATCCCC
 A G T C T G A C C A T G A C T G A C T G C T G A G T C A C G T A A C G T A G C T A G T C A G T C G T A C
A C G T A C G T A C G T C A T G C T A G C T G A T C G A G C T A C G A T G A T C G T A C T G A C T A G C

REL/MA0101.1/Jaspar

Match Rank:5
Score:0.86
Offset:3
Orientation:reverse strand
Alignment:YNKGGRAATTCCC
---GGAAANCCCC
 A G T C T G A C C A T G A C T G A C T G C T G A G T C A C G T A A C G T A G C T A G T C A G T C G T A C
A C G T A C G T A C G T A C T G C T A G C G T A C G T A C G T A A C G T G A T C G A T C T A G C T A G C

NFKB2/MA0778.1/Jaspar

Match Rank:6
Score:0.83
Offset:1
Orientation:reverse strand
Alignment:YNKGGRAATTCCC-
-AGGGGAATCCCCT
 A G T C T G A C C A T G A C T G A C T G C T G A G T C A C G T A A C G T A G C T A G T C A G T C G T A C A C G T
A C G T T C G A C T A G C A T G C A T G C T A G C T G A C G T A A C G T G A T C G T A C G T A C A G T C A C G T

NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer

Match Rank:7
Score:0.81
Offset:1
Orientation:forward strand
Alignment:YNKGGRAATTCCC
-GGGGGAATCCCC
 A G T C T G A C C A T G A C T G A C T G C T G A G T C A C G T A A C G T A G C T A G T C A G T C G T A C
A C G T T C A G C T A G C T A G C T A G T C A G T C G A C T G A C G A T A G T C G A T C A G T C T G A C

NFKB1/MA0105.4/Jaspar

Match Rank:8
Score:0.78
Offset:1
Orientation:forward strand
Alignment:YNKGGRAATTCCC-
-AGGGGAATCCCCT
 A G T C T G A C C A T G A C T G A C T G C T G A G T C A C G T A A C G T A G C T A G T C A G T C G T A C A C G T
A C G T T G C A C T A G A T C G C A T G C T A G T C G A C G T A A G C T G A T C G T A C G T A C G A T C A C G T

NFATC1/MA0624.1/Jaspar

Match Rank:9
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:YNKGGRAATTCCC
NNTGGAAANN---
 A G T C T G A C C A T G A C T G A C T G C T G A G T C A C G T A A C G T A G C T A G T C A G T C G T A C
C G T A C T G A G A C T C T A G A C T G C T G A C T G A G C T A C G T A G C A T A C G T A C G T A C G T

NFATC3/MA0625.1/Jaspar

Match Rank:10
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:YNKGGRAATTCCC
AATGGAAAAT---
 A G T C T G A C C A T G A C T G A C T G C T G A G T C A C G T A A C G T A G C T A G T C A G T C G T A C
C G T A C T G A G A C T T A C G C A T G T C G A C G T A G C T A C T G A G C A T A C G T A C G T A C G T