Information for 1-BCYTTTGTNH (Motif 2)

A C G T A G T C G A T C C G A T A G C T C A G T C T A G C G A T A G C T G T C A
Reverse Opposite:
C A G T T C G A C G T A G A T C G T C A T C G A G C T A C T A G T C A G T G C A
p-value:1e-40
log p-value:-9.388e+01
Information Content per bp:1.550
Number of Target Sequences with motif218.0
Percentage of Target Sequences with motif29.90%
Number of Background Sequences with motif5456.1
Percentage of Background Sequences with motif11.38%
Average Position of motif in Targets49.0 +/- 25.9bp
Average Position of motif in Background49.8 +/- 29.7bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.22
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:1
Score:0.97
Offset:1
Orientation:forward strand
Alignment:BCYTTTGTNH
-CCWTTGTY-
 A C G T A G T C G A T C C G A T A G C T C A G T C T A G C G A T A G C T G T C A
A C G T A T G C G A T C C G A T A C G T A C G T A C T G C A G T A G C T A C G T

Sox2/MA0143.3/Jaspar

Match Rank:2
Score:0.94
Offset:1
Orientation:forward strand
Alignment:BCYTTTGTNH
-CCTTTGTT-
 A C G T A G T C G A T C C G A T A G C T C A G T C T A G C G A T A G C T G T C A
A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A C G T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:3
Score:0.92
Offset:1
Orientation:forward strand
Alignment:BCYTTTGTNH-
-CCWTTGTYYB
 A C G T A G T C G A T C C G A T A G C T C A G T C T A G C G A T A G C T G T C A A C G T
A C G T A T G C A G T C G C A T A G C T A C G T T C A G C G A T A G C T G A T C A T C G

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:4
Score:0.92
Offset:0
Orientation:forward strand
Alignment:BCYTTTGTNH
NCCATTGTTC
 A C G T A G T C G A T C C G A T A G C T C A G T C T A G C G A T A G C T G T C A
A T G C A G T C G A T C C G T A A C G T A C G T A C T G A C G T A G C T G A T C

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:5
Score:0.91
Offset:0
Orientation:reverse strand
Alignment:BCYTTTGTNH
NCCATTGTTY
 A C G T A G T C G A T C C G A T A G C T C A G T C T A G C G A T A G C T G T C A
C T A G A G T C G A T C G C T A C G A T A C G T A T C G A C G T A G C T G A C T

Sox3/MA0514.1/Jaspar

Match Rank:6
Score:0.91
Offset:1
Orientation:forward strand
Alignment:BCYTTTGTNH-
-CCTTTGTTTT
 A C G T A G T C G A T C C G A T A G C T C A G T C T A G C G A T A G C T G T C A A C G T
A C G T A T G C A G T C C G A T A C G T A C G T A T C G A C G T A G C T A G C T A G C T

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:7
Score:0.91
Offset:1
Orientation:forward strand
Alignment:BCYTTTGTNH-
-CCATTGTTNY
 A C G T A G T C G A T C C G A T A G C T C A G T C T A G C G A T A G C T G T C A A C G T
A C G T A T G C G T A C C G T A A G C T G C A T T A C G A G C T A G C T A G T C A G C T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:8
Score:0.89
Offset:1
Orientation:forward strand
Alignment:BCYTTTGTNH-
-CCATTGTTYB
 A C G T A G T C G A T C C G A T A G C T C A G T C T A G C G A T A G C T G T C A A C G T
A C G T A T G C G A T C C G T A A G C T C A G T A T C G G C A T A G C T G A C T A C T G

PB0071.1_Sox4_1/Jaspar

Match Rank:9
Score:0.89
Offset:-3
Orientation:reverse strand
Alignment:---BCYTTTGTNH----
TNNTCCTTTGTTCTNNT
 A C G T A C G T A C G T A C G T A G T C G A T C C G A T A G C T C A G T C T A G C G A T A G C T G T C A A C G T A C G T A C G T A C G T
C G A T C G T A T C A G A G C T A G T C A G T C C G A T A C G T C G A T T A C G C G A T A G C T G A T C G C A T G A C T T G A C C A G T

PB0061.1_Sox11_1/Jaspar

Match Rank:10
Score:0.88
Offset:-3
Orientation:reverse strand
Alignment:---BCYTTTGTNH----
NNNTCCTTTGTTCTNNN
 A C G T A C G T A C G T A C G T A G T C G A T C C G A T A G C T C A G T C T A G C G A T A G C T G T C A A C G T A C G T A C G T A C G T
C G A T C G T A T C A G A G C T A G T C G A T C C G A T A C G T C G A T A C T G C G A T A G C T G A T C G C A T G C A T T G C A C G A T