Information for 1-TTTGCATDWSAAW (Motif 1)

A G C T G A C T C G A T T C A G G T A C G T C A C G A T C G A T C G T A A T C G G T C A C G T A C G A T
Reverse Opposite:
G C T A C G A T C A G T T A G C C G A T G C T A C G T A A C G T A C T G A G T C C G T A C T G A T C G A
p-value:1e-48
log p-value:-1.120e+02
Information Content per bp:1.637
Number of Target Sequences with motif93.0
Percentage of Target Sequences with motif12.76%
Number of Background Sequences with motif841.7
Percentage of Background Sequences with motif1.76%
Average Position of motif in Targets51.0 +/- 25.5bp
Average Position of motif in Background51.2 +/- 30.8bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.13
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pou5f1::Sox2/MA0142.1/Jaspar

Match Rank:1
Score:0.92
Offset:-1
Orientation:reverse strand
Alignment:-TTTGCATDWSAAW-
ATTTGCATAACAAAG
 A C G T A G C T G A C T C G A T T C A G G T A C G T C A C G A T C G A T C G T A A T C G G T C A C G T A C G A T A C G T
G T C A G A C T G A C T G C A T T C A G T G A C G C T A C G A T C T G A G C T A A T G C G T C A T C G A C G T A T C A G

OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:2
Score:0.90
Offset:-1
Orientation:forward strand
Alignment:-TTTGCATDWSAAW-
ATTTGCATAACAATG
 A C G T A G C T G A C T C G A T T C A G G T A C G T C A C G A T C G A T C G T A A T C G G T C A C G T A C G A T A C G T
G C T A G C A T G A C T G C A T T C A G G T A C G C T A G C A T C T G A G C T A T A G C G C T A C T G A C G A T C T A G

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:3
Score:0.74
Offset:-1
Orientation:forward strand
Alignment:-TTTGCATDWSAAW
ATTTGCATAA----
 A C G T A G C T G A C T C G A T T C A G G T A C G T C A C G A T C G A T C G T A A T C G G T C A C G T A C G A T
C G T A A C G T A G C T C G A T C T A G G T A C C G T A A G C T C G T A G C T A A C G T A C G T A C G T A C G T

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:4
Score:0.73
Offset:-4
Orientation:reverse strand
Alignment:----TTTGCATDWSAAW
BTVATTWGCATA-----
 A C G T A C G T A C G T A C G T A G C T G A C T C G A T T C A G G T A C G T C A C G A T C G A T C G T A A T C G G T C A C G T A C G A T
A G T C C A G T T G C A G T C A A C G T A G C T C G A T T C A G G T A C C G T A A C G T C T G A A C G T A C G T A C G T A C G T A C G T

POU3F1/MA0786.1/Jaspar

Match Rank:5
Score:0.72
Offset:-3
Orientation:reverse strand
Alignment:---TTTGCATDWSAAW
TAATTTGCATAA----
 A C G T A C G T A C G T A G C T G A C T C G A T T C A G G T A C G T C A C G A T C G A T C G T A A T C G G T C A C G T A C G A T
C G A T G T C A G C T A G C A T G C A T G C A T T C A G G T A C C T G A G A C T C G T A G C T A A C G T A C G T A C G T A C G T

POU5F1B/MA0792.1/Jaspar

Match Rank:6
Score:0.72
Offset:-1
Orientation:reverse strand
Alignment:-TTTGCATDWSAAW
ATTTGCATA-----
 A C G T A G C T G A C T C G A T T C A G G T A C G T C A C G A T C G A T C G T A A T C G G T C A C G T A C G A T
G C T A G C A T G C A T G C A T T C A G G T A C T C G A G C A T C T G A A C G T A C G T A C G T A C G T A C G T

POU2F2/MA0507.1/Jaspar

Match Rank:7
Score:0.71
Offset:-4
Orientation:forward strand
Alignment:----TTTGCATDWSAAW
TTCATTTGCATAT----
 A C G T A C G T A C G T A C G T A G C T G A C T C G A T T C A G G T A C G T C A C G A T C G A T C G T A A T C G G T C A C G T A C G A T
G A C T C A G T G T A C G C T A A C G T G C A T A C G T C T A G A G T C G T C A A G C T C T G A G C A T A C G T A C G T A C G T A C G T

POU2F1/MA0785.1/Jaspar

Match Rank:8
Score:0.71
Offset:-2
Orientation:reverse strand
Alignment:--TTTGCATDWSAAW
AATTTGCATANT---
 A C G T A C G T A G C T G A C T C G A T T C A G G T A C G T C A C G A T C G A T C G T A A T C G G T C A C G T A C G A T
G T C A G C T A G C A T G A C T G C A T T C A G G T A C T C G A G C A T C T G A G C A T C G A T A C G T A C G T A C G T

Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer

Match Rank:9
Score:0.70
Offset:-4
Orientation:reverse strand
Alignment:----TTTGCATDWSAAW
CTCATTTGCATW-----
 A C G T A C G T A C G T A C G T A G C T G A C T C G A T T C A G G T A C G T C A C G A T C G A T C G T A A T C G G T C A C G T A C G A T
A G T C G C A T T G A C G T C A A C G T A G C T C G A T T C A G T G A C G C T A G C A T C G T A A C G T A C G T A C G T A C G T A C G T

POU3F2/MA0787.1/Jaspar

Match Rank:10
Score:0.70
Offset:-3
Orientation:reverse strand
Alignment:---TTTGCATDWSAAW
TAATTTGCATAA----
 A C G T A C G T A C G T A G C T G A C T C G A T T C A G G T A C G T C A C G A T C G A T C G T A A T C G G T C A C G T A C G A T
C G A T T G C A G C T A C G A T G C A T C G A T T C A G G T A C C T G A A G C T C G T A G C T A A C G T A C G T A C G T A C G T