Information for 7-ATGAATATTCATC (Motif 7)

C T G A C G A T A C T G C G T A C G T A C G A T C G T A A C G T A C G T T A G C C G T A G C A T T A G C
Reverse Opposite:
A T C G C G T A A C G T A C T G T G C A C G T A A C G T C G T A A C G T A C G T A G T C C G T A A G C T
p-value:1e-14
log p-value:-3.355e+01
Information Content per bp:1.859
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.13%
Number of Background Sequences with motif6.1
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets59.8 +/- 17.3bp
Average Position of motif in Background55.0 +/- 43.5bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:1
Score:0.92
Offset:0
Orientation:forward strand
Alignment:ATGAATATTCATC--
ATGAATATTCATGAG
 C T G A C G A T A C T G C G T A C G T A C G A T C G T A A C G T A C G T T A G C C G T A G C A T T A G C A C G T A C G T
G C T A A C G T C T A G G T C A C G T A A C G T C G T A C G A T C A G T A G T C C G T A A C G T C T A G C T G A A T C G

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:2
Score:0.83
Offset:0
Orientation:forward strand
Alignment:ATGAATATTCATC
ATGAATATTC---
 C T G A C G A T A C T G C G T A C G T A C G A T C G T A A C G T A C G T T A G C C G T A G C A T T A G C
G C T A A G C T T A C G G T C A C T G A C G A T C T G A G C A T C A G T A G T C A C G T A C G T A C G T

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:3
Score:0.82
Offset:0
Orientation:forward strand
Alignment:ATGAATATTCATC
ATGMATATDC---
 C T G A C G A T A C T G C G T A C G T A C G A T C G T A A C G T A C G T T A G C C G T A G C A T T A G C
G C T A A C G T C T A G G T A C G C T A G A C T C T G A G C A T C A T G G A T C A C G T A C G T A C G T

OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer

Match Rank:4
Score:0.80
Offset:-2
Orientation:reverse strand
Alignment:--ATGAATATTCATC
AYATGYATATGCATR
 A C G T A C G T C T G A C G A T A C T G C G T A C G T A C G A T C G T A A C G T A C G T T A G C C G T A G C A T T A G C
C T G A G A C T C T G A G A C T C T A G G A T C C T G A G A C T C T G A G A C T C T A G G A T C C T G A G C A T C T A G

PB0178.1_Sox8_2/Jaspar

Match Rank:5
Score:0.69
Offset:-6
Orientation:reverse strand
Alignment:------ATGAATATTCATC
NNTNTCATGAATGT-----
 A C G T A C G T A C G T A C G T A C G T A C G T C T G A C G A T A C T G C G T A C G T A C G A T C G T A A C G T A C G T T A G C C G T A G C A T T A G C
A T G C T A C G C A G T A C T G C G A T G A T C T G C A A G C T C T A G C G T A T C G A C G A T C T A G G A C T A C G T A C G T A C G T A C G T A C G T

POU2F2/MA0507.1/Jaspar

Match Rank:6
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--ATGAATATTCATC
ATATGCAAATNNN--
 A C G T A C G T C T G A C G A T A C T G C G T A C G T A C G A T C G T A A C G T A C G T T A G C C G T A G C A T T A G C
C G T A G A C T C T G A A C G T C T A G G A T C C G T A C G T A C G T A C G A T C A T G G T C A C T G A A C G T A C G T

PB0170.1_Sox17_2/Jaspar

Match Rank:7
Score:0.65
Offset:-5
Orientation:reverse strand
Alignment:-----ATGAATATTCATC
NTTNTATGAATGTGNNC-
 A C G T A C G T A C G T A C G T A C G T C T G A C G A T A C T G C G T A C G T A C G A T C G T A A C G T A C G T T A G C C G T A G C A T T A G C
G C T A G C A T A G C T C T A G A G C T T C G A A G C T A C T G G C T A C T G A C G A T T C A G C A G T C A T G T C A G C G A T A T G C A C G T

PH0148.1_Pou3f3/Jaspar

Match Rank:8
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:ATGAATATTCATC----
TNNATTATGCATANNTT
 C T G A C G A T A C T G C G T A C G T A C G A T C G T A A C G T A C G T T A G C C G T A G C A T T A G C A C G T A C G T A C G T A C G T
G C A T G C A T G A C T G T C A C G A T C G A T C G T A A G C T C A T G G T A C C T G A C G A T C T G A G C A T G A C T C G A T C G A T

POU5F1B/MA0792.1/Jaspar

Match Rank:9
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-ATGAATATTCATC
TATGCAAAT-----
 A C G T C T G A C G A T A C T G C G T A C G T A C G A T C G T A A C G T A C G T T A G C C G T A G C A T T A G C
G A C T C G T A A G C T C A T G A G T C C G T A C G T A C G T A C G A T A C G T A C G T A C G T A C G T A C G T

Arid3b/MA0601.1/Jaspar

Match Rank:10
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---ATGAATATTCATC
NTAATTAATAT-----
 A C G T A C G T A C G T C T G A C G A T A C T G C G T A C G T A C G A T C G T A A C G T A C G T T A G C C G T A G C A T T A G C
A C G T A C G T C G T A C G T A C G A T A C G T C G T A C G T A C G A T C G T A A C G T A C G T A C G T A C G T A C G T A C G T