Information for 7-YCTGCAGCCCGSTGAG (Motif 19)

A G C T T A G C A C G T A T C G T A G C G T C A A T C G T A G C A T G C A G T C C T A G A T C G A C G T A C T G T C G A A C T G
Reverse Opposite:
T G A C A G C T A G T C G T C A T A G C G A T C C T A G T A C G A T C G A T G C C A G T A T C G A T G C C G T A A T C G T C G A
p-value:1e-8
log p-value:-1.991e+01
Information Content per bp:1.701
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.88%
Number of Background Sequences with motif12.8
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets61.0 +/- 19.4bp
Average Position of motif in Background62.6 +/- 22.3bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:1
Score:0.55
Offset:7
Orientation:forward strand
Alignment:YCTGCAGCCCGSTGAG-
-------CCTGCTGAGH
 A G C T T A G C A C G T A T C G T A G C G T C A A T C G T A G C A T G C A G T C C T A G A T C G A C G T A C T G T C G A A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A

GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer

Match Rank:2
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--YCTGCAGCCCGSTGAG--
CNGCTGNNGNNNNCAGATAA
 A C G T A C G T A G C T T A G C A C G T A T C G T A G C G T C A A T C G T A G C A T G C A G T C C T A G A T C G A C G T A C T G T C G A A C T G A C G T A C G T
T G A C C T A G A C T G T A G C C G A T A C T G A T G C C A T G A T C G A T C G A T C G T A G C C T G A T A G C G C T A A C T G C G T A A G C T C G T A C T G A

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:3
Score:0.53
Offset:2
Orientation:forward strand
Alignment:YCTGCAGCCCGSTGAG-
--GGCCYCCTGCTGDGH
 A G C T T A G C A C G T A T C G T A G C G T C A A T C G T A G C A T G C A G T C C T A G A T C G A C G T A C T G T C G A A C T G A C G T
A C G T A C G T C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C

GATA1::TAL1/MA0140.2/Jaspar

Match Rank:4
Score:0.51
Offset:1
Orientation:reverse strand
Alignment:YCTGCAGCCCGSTGAG---
-CTGNNNNNNNCAGATAAG
 A G C T T A G C A C G T A T C G T A G C G T C A A T C G T A G C A T G C A G T C C T A G A T C G A C G T A C T G T C G A A C T G A C G T A C G T A C G T
A C G T T A G C C G A T A C T G A G T C C G A T A G T C A T G C C A G T A G T C T G C A T A G C C G T A A C T G C G T A A C G T C G T A C T G A A C T G

ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer

Match Rank:5
Score:0.48
Offset:5
Orientation:reverse strand
Alignment:YCTGCAGCCCGSTGAG----
-----RGSMTBCTGGGAAAT
 A G C T T A G C A C G T A T C G T A G C G T C A A T C G T A G C A T G C A G T C C T A G A T C G A C G T A C T G T C G A A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C T A G A C T G T A G C G T C A A G C T A G C T T G A C G A C T A C T G A C T G A C T G C G T A T C G A C G T A A C G T

ZIC4/MA0751.1/Jaspar

Match Rank:6
Score:0.48
Offset:2
Orientation:forward strand
Alignment:YCTGCAGCCCGSTGAG-
--GACCCCCCGCTGTGC
 A G C T T A G C A C G T A T C G T A G C G T C A A T C G T A G C A T G C A G T C C T A G A T C G A C G T A C T G T C G A A C T G A C G T
A C G T A C G T A C T G T C G A G T A C G T A C G T A C G T A C G T A C G A T C C T A G A G T C C A G T C T A G G A C T A C T G G T A C

PB0207.1_Zic3_2/Jaspar

Match Rank:7
Score:0.47
Offset:4
Orientation:reverse strand
Alignment:YCTGCAGCCCGSTGAG---
----NNTCCTGCTGTGNNN
 A G C T T A G C A C G T A T C G T A G C G T C A A T C G T A G C A T G C A G T C C T A G A T C G A C G T A C T G T C G A A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G C A T A T C G C A G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G G A C T A C T G G A T C G C A T G T A C

PB0205.1_Zic1_2/Jaspar

Match Rank:8
Score:0.47
Offset:4
Orientation:reverse strand
Alignment:YCTGCAGCCCGSTGAG---
----TNTCCTGCTGTGNNG
 A G C T T A G C A C G T A T C G T A G C G T C A A T C G T A G C A T G C A G T C C T A G A T C G A C G T A C T G T C G A A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:9
Score:0.47
Offset:4
Orientation:reverse strand
Alignment:YCTGCAGCCCGSTGAG
----CCCCCTGCTGTG
 A G C T T A G C A C G T A T C G T A G C G T C A A T C G T A G C A T G C A G T C C T A G A T C G A C G T A C T G T C G A A C T G
A C G T A C G T A C G T A C G T G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G

PB0206.1_Zic2_2/Jaspar

Match Rank:10
Score:0.47
Offset:4
Orientation:reverse strand
Alignment:YCTGCAGCCCGSTGAG---
----TCNCCTGCTGNGNNN
 A G C T T A G C A C G T A T C G T A G C G T C A A T C G T A G C A T G C A G T C C T A G A T C G A C G T A C T G T C G A A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G