Information for 3-CCTGGCAGGTGGCAGG (Motif 3)

A G T C G T A C A C G T A C T G A T C G A T G C C G T A A C T G C T A G C G A T C T A G A C T G A G T C C T G A A C T G A C T G
Reverse Opposite:
T A G C A G T C G A C T C T A G A G T C A G T C C G T A A G T C A G T C A C G T A T C G A T G C A G T C C G T A A C T G A C T G
p-value:1e-13
log p-value:-3.174e+01
Information Content per bp:1.847
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.80%
Number of Background Sequences with motif2.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets71.4 +/- 24.7bp
Average Position of motif in Background50.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer

Match Rank:1
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:CCTGGCAGGTGGCAGG
--SDGCAGGTGCNS--
 A G T C G T A C A C G T A C T G A T C G A T G C C G T A A C T G C T A G C G A T C T A G A C T G A G T C C T G A A C T G A C T G
A C G T A C G T A T C G C T A G C T A G A G T C C G T A A C T G A C T G A C G T A C T G A T G C G A T C A T G C A C G T A C G T

PKNOX2/MA0783.1/Jaspar

Match Rank:2
Score:0.63
Offset:2
Orientation:forward strand
Alignment:CCTGGCAGGTGGCAGG
--TGACAGGTGTCA--
 A G T C G T A C A C G T A C T G A T C G A T G C C G T A A C T G C T A G C G A T C T A G A C T G A G T C C T G A A C T G A C T G
A C G T A C G T C G A T T A C G C T G A A G T C C G T A C A T G T A C G A G C T T C A G G A C T T G A C C T G A A C G T A C G T

E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:3
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:CCTGGCAGGTGGCAGG
---NNCAGGTGNN---
 A G T C G T A C A C G T A C T G A T C G A T G C C G T A A C T G C T A G C G A T C T A G A C T G A G T C C T G A A C T G A C T G
A C G T A C G T A C G T C A G T T A C G A G T C C G T A A C T G A C T G A C G T A C T G A C G T T A C G A C G T A C G T A C G T

INSM1/MA0155.1/Jaspar

Match Rank:4
Score:0.62
Offset:2
Orientation:forward strand
Alignment:CCTGGCAGGTGGCAGG
--TGTCAGGGGGCG--
 A G T C G T A C A C G T A C T G A T C G A T G C C G T A A C T G C T A G C G A T C T A G A C T G A G T C C T G A A C T G A C T G
A C G T A C G T C A G T A C T G A G C T G T A C C G T A A C T G A T C G A C T G A C T G A C T G G A T C C T A G A C G T A C G T

PB0149.1_Myb_2/Jaspar

Match Rank:5
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-CCTGGCAGGTGGCAGG
NNNTGGCAGTTGGTNN-
 A C G T A G T C G T A C A C G T A C T G A T C G A T G C C G T A A C T G C T A G C G A T C T A G A C T G A G T C C T G A A C T G A C T G
C T A G T A G C T C G A G A C T C T A G C T A G A G T C C T G A A C T G A C G T G A C T C T A G T C A G C A G T G T A C T A C G A C G T

PKNOX1/MA0782.1/Jaspar

Match Rank:6
Score:0.61
Offset:2
Orientation:forward strand
Alignment:CCTGGCAGGTGGCAGG
--TGACAGGTGTCA--
 A G T C G T A C A C G T A C T G A T C G A T G C C G T A A C T G C T A G C G A T C T A G A C T G A G T C C T G A A C T G A C T G
A C G T A C G T G A C T T A C G C T G A G T A C C T G A C A T G T A C G A G C T T C A G G C A T T A G C C G T A A C G T A C G T

SNAI2/MA0745.1/Jaspar

Match Rank:7
Score:0.61
Offset:3
Orientation:forward strand
Alignment:CCTGGCAGGTGGCAGG
---AACAGGTGT----
 A G T C G T A C A C G T A C T G A T C G A T G C C G T A A C T G C T A G C G A T C T A G A C T G A G T C C T G A A C T G A C T G
A C G T A C G T A C G T C T G A C T G A G T A C G C T A C T A G C T A G G A C T C A T G A G C T A C G T A C G T A C G T A C G T

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:8
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:CCTGGCAGGTGGCAGG
---AACAGATGGC---
 A G T C G T A C A C G T A C T G A T C G A T G C C G T A A C T G C T A G C G A T C T A G A C T G A G T C C T G A A C T G A C T G
A C G T A C G T A C G T C T G A T C G A A G T C G T C A A C T G T G C A G C A T A C T G A C T G A G T C A C G T A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:9
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:CCTGGCAGGTGGCAGG
CTTGGCAA--------
 A G T C G T A C A C G T A C T G A T C G A T G C C G T A A C T G C T A G C G A T C T A G A C T G A G T C C T G A A C T G A C T G
A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Myb/MA0100.2/Jaspar

Match Rank:10
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:CCTGGCAGGTGGCAGG
--TGGCAGTTGN----
 A G T C G T A C A C G T A C T G A T C G A T G C C G T A A C T G C T A G C G A T C T A G A C T G A G T C C T G A A C T G A C T G
A C G T A C G T C G A T A C T G C T A G A G T C C G T A A C T G A G C T A C G T C T A G T C A G A C G T A C G T A C G T A C G T