Information for 9-TCTGCAGGTCAAG (Motif 6)

A C G T A G T C A G C T A C T G T A G C G T C A A C T G A C T G A C G T A G T C C G T A C G T A A C T G
Reverse Opposite:
A G T C A C G T A C G T A C T G C G T A A G T C A G T C A C G T A C T G G T A C C T G A A C T G C G T A
p-value:1e-11
log p-value:-2.535e+01
Information Content per bp:1.929
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.63%
Number of Background Sequences with motif1.5
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets48.0 +/- 27.0bp
Average Position of motif in Background34.0 +/- 5.2bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:1
Score:0.71
Offset:5
Orientation:forward strand
Alignment:TCTGCAGGTCAAG----
-----AGGTCAAGGTCA
 A C G T A G T C A G C T A C T G T A G C G T C A A C T G A C T G A C G T A G T C C G T A C G T A A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T C G A A C T G C A T G A G C T A G T C C G T A C T G A C T A G A C T G C G A T A T G C C T G A

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:2
Score:0.67
Offset:5
Orientation:forward strand
Alignment:TCTGCAGGTCAAG----
-----AGGTCAAGGTCA
 A C G T A G T C A G C T A C T G T A G C G T C A A C T G A C T G A C G T A G T C C G T A C G T A A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C T G A C T A G A C T G G C A T A T G C C G T A C T G A C T A G A C T G A C G T A G T C C T G A

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:3
Score:0.67
Offset:5
Orientation:forward strand
Alignment:TCTGCAGGTCAAG
-----AGGTCA--
 A C G T A G T C A G C T A C T G T A G C G T C A A C T G A C T G A C G T A G T C C G T A C G T A A C T G
A C G T A C G T A C G T A C G T A C G T C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:4
Score:0.64
Offset:3
Orientation:forward strand
Alignment:TCTGCAGGTCAAG
---TRAGGTCA--
 A C G T A G T C A G C T A C T G T A G C G T C A A C T G A C T G A C G T A G T C C G T A C G T A A C T G
A C G T A C G T A C G T G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T

Esrrg/MA0643.1/Jaspar

Match Rank:5
Score:0.63
Offset:2
Orientation:forward strand
Alignment:TCTGCAGGTCAAG
--TCAAGGTCAT-
 A C G T A G T C A G C T A C T G T A G C G T C A A C T G A C T G A C G T A G T C C G T A C G T A A C T G
A C G T A C G T G A C T T A G C C T G A T C G A C A T G A T C G C A G T A G T C C T G A G C A T A C G T

RORA/MA0071.1/Jaspar

Match Rank:6
Score:0.63
Offset:1
Orientation:forward strand
Alignment:TCTGCAGGTCAAG
-ATCAAGGTCA--
 A C G T A G T C A G C T A C T G T A G C G T C A A C T G A C T G A C G T A G T C C G T A C G T A A C T G
A C G T C G T A G C A T T G A C C G T A C T G A A C T G A C T G A C G T A G T C C G T A A C G T A C G T

NR4A2/MA0160.1/Jaspar

Match Rank:7
Score:0.62
Offset:4
Orientation:forward strand
Alignment:TCTGCAGGTCAAG
----AAGGTCAC-
 A C G T A G T C A G C T A C T G T A G C G T C A A C T G A C T G A C G T A G T C C G T A C G T A A C T G
A C G T A C G T A C G T A C G T C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C A C G T

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:TCTGCAGGTCAAG
--TCAAGGTCAN-
 A C G T A G T C A G C T A C T G T A G C G T C A A C T G A C T G A C G T A G T C C G T A C G T A A C T G
A C G T A C G T A G C T T A G C C T G A T C G A A T C G C A T G C A G T A T G C T C G A G T A C A C G T

NR2F1/MA0017.2/Jaspar

Match Rank:9
Score:0.62
Offset:2
Orientation:forward strand
Alignment:TCTGCAGGTCAAG--
--CAAAGGTCAAGGG
 A C G T A G T C A G C T A C T G T A G C G T C A A C T G A C T G A C G T A G T C C G T A C G T A A C T G A C G T A C G T
A C G T A C G T G T A C G C T A C T G A C T G A A T C G A C T G A C G T A G T C C T G A G T C A T C A G T C A G C T A G

PB0153.1_Nr2f2_2/Jaspar

Match Rank:10
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-TCTGCAGGTCAAG--
CGCGCCGGGTCACGTA
 A C G T A C G T A G T C A G C T A C T G T A G C G T C A A C T G A C T G A C G T A G T C C G T A C G T A A C T G A C G T A C G T
T A G C A C T G T G A C A C T G A G T C A T G C C T A G A C T G A C T G A C G T A G T C C T G A T A G C A C T G A G C T G C T A