Information for 5-AGGCACGCTT (Motif 9)

G T C A A T C G A T C G T G A C C T G A T G A C T C A G A G T C A G C T C A G T
Reverse Opposite:
G T C A C T G A C T A G A G T C A C T G G A C T A C T G T A G C A T G C A C G T
p-value:1e-11
log p-value:-2.614e+01
Information Content per bp:1.741
Number of Target Sequences with motif33.0
Percentage of Target Sequences with motif3.53%
Number of Background Sequences with motif371.3
Percentage of Background Sequences with motif0.80%
Average Position of motif in Targets46.0 +/- 26.1bp
Average Position of motif in Background50.9 +/- 30.4bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0180.1_Sp4_2/Jaspar

Match Rank:1
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--AGGCACGCTT---
NNGGCCACGCCTTTN
 A C G T A C G T G T C A A T C G A T C G T G A C C T G A T G A C T C A G A G T C A G C T C A G T A C G T A C G T A C G T
G T A C C A G T C T A G C T A G T G A C G A T C T G C A T G A C A C T G T G A C T A G C A G C T G C A T G C A T T C A G

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:2
Score:0.66
Offset:3
Orientation:reverse strand
Alignment:AGGCACGCTT
---CACGCA-
 G T C A A T C G A T C G T G A C C T G A T G A C T C A G A G T C A G C T C A G T
A C G T A C G T A C G T A G T C C G T A G T A C C T A G G T A C C T G A A C G T

Hes1/MA1099.1/Jaspar

Match Rank:3
Score:0.65
Offset:1
Orientation:forward strand
Alignment:AGGCACGCTT-
-GGCACGCGTC
 G T C A A T C G A T C G T G A C C T G A T G A C T C A G A G T C A G C T C A G T A C G T
A C G T T A C G T A C G G A T C C T G A A G T C T C A G G A T C A C T G G A C T G T A C

Nr2e3/MA0164.1/Jaspar

Match Rank:4
Score:0.63
Offset:3
Orientation:forward strand
Alignment:AGGCACGCTT
---CAAGCTT
 G T C A A T C G A T C G T G A C C T G A T G A C T C A G A G T C A G C T C A G T
A C G T A C G T A C G T G A T C C G T A C G T A A T C G A G T C A C G T A C G T

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:5
Score:0.62
Offset:0
Orientation:forward strand
Alignment:AGGCACGCTT
TBGCACGCAA
 G T C A A T C G A T C G T G A C C T G A T G A C T C A G A G T C A G C T C A G T
G C A T A T C G C A T G G T A C G C T A A G T C T C A G T G A C G T C A T G C A

POL006.1_BREu/Jaspar

Match Rank:6
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:AGGCACGCTT
-GGCGCGCT-
 G T C A A T C G A T C G T G A C C T G A T G A C T C A G A G T C A G C T C A G T
A C G T C T A G T A C G A G T C A C T G A G T C A T C G A T G C A C G T A C G T

PAX1/MA0779.1/Jaspar

Match Rank:7
Score:0.59
Offset:0
Orientation:forward strand
Alignment:AGGCACGCTT-------
CGTCACGCATGACTGCA
 G T C A A T C G A T C G T G A C C T G A T G A C T C A G A G T C A G C T C A G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A T G C C A T G G C A T G A T C T G C A G A T C C A T G A T G C G C T A G A C T A T C G T C G A T A G C G A C T C A T G T G A C G T C A

PAX9/MA0781.1/Jaspar

Match Rank:8
Score:0.58
Offset:0
Orientation:forward strand
Alignment:AGGCACGCTT-------
CGTCACGCATGACTGCA
 G T C A A T C G A T C G T G A C C T G A T G A C T C A G A G T C A G C T C A G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A T G C A C T G G C A T A G T C T G C A A G T C A C T G A T G C G C T A G A C T A T C G C T G A T A G C G A C T C A T G T G A C G T C A

PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:9
Score:0.58
Offset:1
Orientation:forward strand
Alignment:AGGCACGCTT-----
-GTCACGCTCNCTGA
 G T C A A T C G A T C G T G A C C T G A T G A C T C A G A G T C A G C T C A G T A C G T A C G T A C G T A C G T A C G T
A C G T A C T G G A C T A G T C C T G A G A T C T C A G A T G C G A C T A G T C A T G C T A G C A G C T A T C G T G C A

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:10
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:AGGCACGCTT------
NGTCACGCTTGGCTGC
 G T C A A T C G A T C G T G A C C T G A T G A C T C A G A G T C A G C T C A G T A C G T A C G T A C G T A C G T A C G T A C G T
C T A G A C T G A G C T A G T C G T C A G A T C T C A G A T G C G C A T G A C T A T C G T C A G T A G C G A C T C T A G T G A C