Information for 3-CMCGCGTGGR (Motif 4)

A G T C T G C A A T G C T A C G G T A C T A C G C A G T A C T G A C T G T C A G
Reverse Opposite:
A G T C T G A C T G A C G T C A A T G C C A T G A T G C T A C G A C G T T C A G
p-value:1e-14
log p-value:-3.329e+01
Information Content per bp:1.537
Number of Target Sequences with motif300.0
Percentage of Target Sequences with motif32.12%
Number of Background Sequences with motif9753.1
Percentage of Background Sequences with motif21.12%
Average Position of motif in Targets50.1 +/- 25.4bp
Average Position of motif in Background50.2 +/- 33.2bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hes1/MA1099.1/Jaspar

Match Rank:1
Score:0.75
Offset:0
Orientation:reverse strand
Alignment:CMCGCGTGGR
NNCGCGTGNN
 A G T C T G C A A T G C T A C G G T A C T A C G C A G T A C T G A C T G T C A G
C A T G C T G A T G A C C T A G A G T C T C A G G A C T C T A G A T G C A T G C

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:2
Score:0.74
Offset:2
Orientation:forward strand
Alignment:CMCGCGTGGR
--TGCGTG--
 A G T C T G C A A T G C T A C G G T A C T A C G C A G T A C T G A C T G T C A G
A C G T A C G T G A C T A C T G A G T C A C T G A C G T A C T G A C G T A C G T

Tcfl5/MA0632.1/Jaspar

Match Rank:3
Score:0.70
Offset:0
Orientation:forward strand
Alignment:CMCGCGTGGR
GGCACGTGCC
 A G T C T G C A A T G C T A C G G T A C T A C G C A G T A C T G A C T G T C A G
C T A G A C T G G T A C C T G A A G T C T C A G G A C T C A T G T G A C G A T C

c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer

Match Rank:4
Score:0.68
Offset:2
Orientation:reverse strand
Alignment:CMCGCGTGGR
--CACGTGGN
 A G T C T G C A A T G C T A C G G T A C T A C G C A G T A C T G A C T G T C A G
A C G T A C G T G T A C C T G A A G T C C T A G G A C T A C T G A T C G A G C T

ZBTB33/MA0527.1/Jaspar

Match Rank:5
Score:0.67
Offset:-5
Orientation:reverse strand
Alignment:-----CMCGCGTGGR
NAGNTCTCGCGAGAN
 A C G T A C G T A C G T A C G T A C G T A G T C T G C A A T G C T A C G G T A C T A C G C A G T A C T G A C T G T C A G
T A G C T C G A T C A G T C G A A G C T T G A C A G C T A G T C C T A G G A T C A C T G C T G A A C T G T C G A T C A G

PB0102.1_Zic2_1/Jaspar

Match Rank:6
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---CMCGCGTGGR--
ACCCCCCCGGGGGGN
 A C G T A C G T A C G T A G T C T G C A A T G C T A C G G T A C T A C G C A G T A C T G A C T G T C A G A C G T A C G T
T G C A T A G C G T A C G T A C G T A C G T A C A T G C T G A C A T C G A T C G A C T G C A T G C A T G C A T G T A C G

n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:CMCGCGTGGR-
-CCACGTGGNN
 A G T C T G C A A T G C T A C G G T A C T A C G C A G T A C T G A C T G T C A G A C G T
A C G T T A G C A G T C C G T A A G T C C T A G G C A T A C T G A T C G A G C T A T G C

PB0103.1_Zic3_1/Jaspar

Match Rank:8
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---CMCGCGTGGR--
NCCCCCCCGGGGGGN
 A C G T A C G T A C G T A G T C T G C A A T G C T A C G G T A C T A C G C A G T A C T G A C T G T C A G A C G T A C G T
T C G A T A G C G T A C G T A C G T A C G T A C A T G C T G A C A T C G T A C G A C T G C A T G C A T G C A T G T A C G

Mycn/MA0104.3/Jaspar

Match Rank:9
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:CMCGCGTGGR
--CACGTGGC
 A G T C T G C A A T G C T A C G G T A C T A C G C A G T A C T G A C T G T C A G
A C G T A C G T A G T C C G T A A G T C A C T G A C G T A C T G A T C G G A T C

c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:CMCGCGTGGR-
-CCACGTGGNN
 A G T C T G C A A T G C T A C G G T A C T A C G C A G T A C T G A C T G T C A G A C G T
A C G T T A G C A G T C C G T A A G T C C T A G A G C T A C T G A T C G A G T C A G T C