Information for 6-GCCACTGGCCGCCAGG (Motif 13)

T A C G G T A C A G T C T C G A G A T C A C G T A T C G A T C G A G T C A G T C T A C G T G A C A T G C G T C A A T C G A C T G
Reverse Opposite:
T G A C A T G C C A G T A T C G A C T G A G T C T C A G A C T G A T G C A T G C T G C A C A T G A G C T C T A G A C T G A T G C
p-value:1e-10
log p-value:-2.333e+01
Information Content per bp:1.741
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.28%
Number of Background Sequences with motif40.5
Percentage of Background Sequences with motif0.09%
Average Position of motif in Targets50.4 +/- 22.3bp
Average Position of motif in Background54.5 +/- 24.2bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

TFAP2A/MA0003.3/Jaspar

Match Rank:1
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-GCCACTGGCCGCCAGG
CGCCTCAGGCA------
 A C G T T A C G G T A C A G T C T C G A G A T C A C G T A T C G A T C G A G T C A G T C T A C G T G A C A T G C G T C A A T C G A C T G
G T A C T A C G A T G C A G T C A G C T T A G C T G C A T C A G A T C G T A G C C G T A A C G T A C G T A C G T A C G T A C G T A C G T

TFAP2B(var.2)/MA0812.1/Jaspar

Match Rank:2
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-GCCACTGGCCGCCAGG
AGCCTCAGGCA------
 A C G T T A C G G T A C A G T C T C G A G A T C A C G T A T C G A T C G A G T C A G T C T A C G T G A C A T G C G T C A A T C G A C T G
G T C A T A C G A T G C A G T C A G C T T A G C T G C A T C A G T A C G T A G C C G T A A C G T A C G T A C G T A C G T A C G T A C G T

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:3
Score:0.52
Offset:4
Orientation:forward strand
Alignment:GCCACTGGCCGCCAGG--
----CTGGCAGNCTGCCA
 T A C G G T A C A G T C T C G A G A T C A C G T A T C G A T C G A G T C A G T C T A C G T G A C A T G C G T C A A T C G A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A G T C C G A T A C T G A T C G T G A C G C T A C A T G A T C G T G A C C G A T A C T G T A G C G T A C G T C A

YY1(Zf)/Promoter/Homer

Match Rank:4
Score:0.51
Offset:7
Orientation:reverse strand
Alignment:GCCACTGGCCGCCAGG---
-------GCCGCCATCTTG
 T A C G G T A C A G T C T C G A G A T C A C G T A T C G A T C G A G T C A G T C T A C G T G A C A T G C G T C A A T C G A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A T G G A T C A T G C C T A G A G T C A G T C C G T A A C G T A T G C A G C T A C G T A T C G

Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer

Match Rank:5
Score:0.51
Offset:0
Orientation:forward strand
Alignment:GCCACTGGCCGCCAGG----
VCAKCTGGNNNCCAGMTGBN
 T A C G G T A C A G T C T C G A G A T C A C G T A T C G A T C G A G T C A G T C T A C G T G A C A T G C G T C A A T C G A C T G A C G T A C G T A C G T A C G T
T G A C G T A C C G T A A C T G T G A C C G A T A C T G A T C G A G C T T A C G T C G A T A G C G T A C C G T A A T C G T G A C G C A T A C T G A C T G A T G C

TFAP2C(var.2)/MA0814.1/Jaspar

Match Rank:6
Score:0.51
Offset:-1
Orientation:reverse strand
Alignment:-GCCACTGGCCGCCAGG
NGCCTNAGGCN------
 A C G T T A C G G T A C A G T C T C G A G A T C A C G T A T C G A T C G A G T C A G T C T A C G T G A C A T G C G T C A A T C G A C T G
G C A T A T C G A T G C A G T C A G C T A T C G T C G A T C A G A T C G A T G C C A G T A C G T A C G T A C G T A C G T A C G T A C G T

YY2/MA0748.1/Jaspar

Match Rank:7
Score:0.50
Offset:6
Orientation:forward strand
Alignment:GCCACTGGCCGCCAGG-
------GTCCGCCATTA
 T A C G G T A C A G T C T C G A G A T C A C G T A T C G A T C G A G T C A G T C T A C G T G A C A T G C G T C A A T C G A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C T A G C G A T G A T C A T G C T A C G T G A C A G T C C G T A C G A T G A C T C G T A

NFIC/MA0161.1/Jaspar

Match Rank:8
Score:0.50
Offset:9
Orientation:reverse strand
Alignment:GCCACTGGCCGCCAGG
---------TGCCAA-
 T A C G G T A C A G T C T C G A G A T C A C G T A T C G A T C G A G T C A G T C T A C G T G A C A T G C G T C A A T C G A C T G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T

PB0164.1_Smad3_2/Jaspar

Match Rank:9
Score:0.50
Offset:2
Orientation:forward strand
Alignment:GCCACTGGCCGCCAGG---
--TACGCCCCGCCACTCTG
 T A C G G T A C A G T C T C G A G A T C A C G T A T C G A T C G A G T C A G T C T A C G T G A C A T G C G T C A A T C G A C T G A C G T A C G T A C G T
A C G T A C G T C A G T G T C A G T A C A C T G G A T C A G T C T A G C A T G C T A C G A G T C G T A C G T C A G T A C G A C T A G T C G A C T A C T G

CTCF/MA0139.1/Jaspar

Match Rank:10
Score:0.49
Offset:5
Orientation:forward strand
Alignment:GCCACTGGCCGCCAGG--------
-----TGGCCACCAGGGGGCGCTA
 T A C G G T A C A G T C T C G A G A T C A C G T A T C G A T C G A G T C A G T C T A C G T G A C A T G C G T C A A T C G A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A