Information for 1-AGYSCAGRGTGCM (Motif 2)

C T G A A C T G A G C T A T C G A G T C C G T A A C T G C T A G A C T G A C G T A C T G A G T C G T C A
Reverse Opposite:
A C G T C T A G A G T C C G T A A G T C A G T C A G T C A C G T A C T G A T G C C T G A A G T C A G C T
p-value:1e-13
log p-value:-3.023e+01
Information Content per bp:1.876
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.64%
Number of Background Sequences with motif2.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets71.0 +/- 12.0bp
Average Position of motif in Background46.5 +/- 26.1bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.17
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:1
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---AGYSCAGRGTGCM
CANAGNNCAAAGTCCA
 A C G T A C G T A C G T C T G A A C T G A G C T A T C G A G T C C G T A A C T G C T A G A C T G A C G T A C T G A G T C G T C A
G T A C G C T A T C A G C T G A C T A G C A T G A G C T G A T C T G C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A

HNF4G/MA0484.1/Jaspar

Match Rank:2
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--AGYSCAGRGTGCM
AGAGTCCAAAGTCCA
 A C G T A C G T C T G A A C T G A G C T A T C G A G T C C G T A A C T G C T A G A C T G A C G T A C T G A G T C G T C A
C G T A T C A G C T G A C T A G C A G T A G T C A G T C T G C A T C G A C T G A C A T G C A G T A G T C G A T C G C T A

MTF1/MA0863.1/Jaspar

Match Rank:3
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:AGYSCAGRGTGCM--
-GTGCCGTGTGCAAA
 C T G A A C T G A G C T A T C G A G T C C G T A A C T G C T A G A C T G A C G T A C T G A G T C G T C A A C G T A C G T
A C G T C T A G A C G T C T A G G T A C G A T C A C T G A C G T A C T G G A C T A C T G A G T C C G T A T G C A G T C A

PB0091.1_Zbtb3_1/Jaspar

Match Rank:4
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---AGYSCAGRGTGCM-
NNNANTGCAGTGCNNTT
 A C G T A C G T A C G T C T G A A C T G A G C T A T C G A G T C C G T A A C T G C T A G A C T G A C G T A C T G A G T C G T C A A C G T
T G A C T A C G T A C G T G C A T C G A A C G T T A C G G T A C C G T A A T C G A G C T C A T G T A G C T A C G T C G A G A C T G A C T

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:5
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-AGYSCAGRGTGCM
TAGGGCAAAGGTCA
 A C G T C T G A A C T G A G C T A T C G A G T C C G T A A C T G C T A G A C T G A C G T A C T G A G T C G T C A
A G C T C T G A C T A G C T A G A C T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C T C G A

PB0044.1_Mtf1_1/Jaspar

Match Rank:6
Score:0.55
Offset:1
Orientation:forward strand
Alignment:AGYSCAGRGTGCM----
-GGGCCGTGTGCAAAAA
 C T G A A C T G A G C T A T C G A G T C C G T A A C T G C T A G A C T G A C G T A C T G A G T C G T C A A C G T A C G T A C G T A C G T
A C G T C A T G A C T G C T A G G A T C G T A C C A T G C A G T A C T G G A C T C A T G G T A C C G T A T G C A G T C A C T G A G C A T

ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer

Match Rank:7
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-AGYSCAGRGTGCM-
NAGGTCACNNTGACC
 A C G T C T G A A C T G A G C T A T C G A G T C C G T A A C T G C T A G A C T G A C G T A C T G A G T C G T C A A C G T
T G C A C T G A C A T G C T A G C A G T A G T C C G T A A T G C A T G C T A C G G C A T T C A G G T C A G A T C G T A C

Pparg::Rxra/MA0065.2/Jaspar

Match Rank:8
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--AGYSCAGRGTGCM
GTAGGGCAAAGGTCA
 A C G T A C G T C T G A A C T G A G C T A T C G A G T C C G T A A C T G C T A G A C T G A C G T A C T G A G T C G T C A
A T C G A G C T C T G A C T A G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:9
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:AGYSCAGRGTGCM
TGCCCAGNHW---
 C T G A A C T G A G C T A T C G A G T C C G T A A C T G C T A G A C T G A C G T A C T G A G T C G T C A
C G A T C A T G A G T C G A T C G T A C G C T A C T A G C A T G G A T C C G T A A C G T A C G T A C G T

NR2C2/MA0504.1/Jaspar

Match Rank:10
Score:0.52
Offset:-2
Orientation:forward strand
Alignment:--AGYSCAGRGTGCM
AGGGGTCAGAGGTCA
 A C G T A C G T C T G A A C T G A G C T A T C G A G T C C G T A A C T G C T A G A C T G A C G T A C T G A G T C G T C A
T G C A T C A G T C A G A C T G C A T G C A G T A T G C C T G A C T A G C T G A C T A G C A T G A C G T A G T C C T G A