Information for 3-AGCAATTTAA (Motif 6)

C G T A T C A G A G T C G T C A T C G A A G C T C A G T A G C T G C T A C G T A
Reverse Opposite:
G C A T C G A T T C G A G T C A T C G A A G C T C A G T T C A G A G T C G C A T
p-value:1e-12
log p-value:-2.890e+01
Information Content per bp:1.679
Number of Target Sequences with motif60.0
Percentage of Target Sequences with motif7.39%
Number of Background Sequences with motif1192.7
Percentage of Background Sequences with motif2.50%
Average Position of motif in Targets48.5 +/- 29.9bp
Average Position of motif in Background48.6 +/- 30.7bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hmx1/MA0896.1/Jaspar

Match Rank:1
Score:0.76
Offset:-3
Orientation:forward strand
Alignment:---AGCAATTTAA----
ACAAGCAATTAATGAAT
 A C G T A C G T A C G T C G T A T C A G A G T C G T C A T C G A A G C T C A G T A G C T G C T A C G T A A C G T A C G T A C G T A C G T
T G C A T A G C T G C A C T G A T C A G G A T C C T G A G T C A A C G T G A C T C G T A C G T A C G A T T A C G T G C A C G T A A C G T

PH0041.1_Hmx1/Jaspar

Match Rank:2
Score:0.76
Offset:-3
Orientation:forward strand
Alignment:---AGCAATTTAA----
ACAAGCAATTAATGAAT
 A C G T A C G T A C G T C G T A T C A G A G T C G T C A T C G A A G C T C A G T A G C T G C T A C G T A A C G T A C G T A C G T A C G T
T G C A T A G C T G C A C T G A T C A G G A T C C T G A G T C A A C G T G A C T C G T A C G T A C G A T T A C G T G C A C G T A A C G T

Hmx3/MA0898.1/Jaspar

Match Rank:3
Score:0.75
Offset:-3
Orientation:forward strand
Alignment:---AGCAATTTAA----
ACAAGCAATTAAAGAAT
 A C G T A C G T A C G T C G T A T C A G A G T C G T C A T C G A A G C T C A G T A G C T G C T A C G T A A C G T A C G T A C G T A C G T
T C G A A T G C T G C A T C G A C A T G G A T C C T G A G T C A C G A T G A C T C G T A C G T A G C T A C T A G T C G A C G T A C A G T

PH0043.1_Hmx3/Jaspar

Match Rank:4
Score:0.75
Offset:-3
Orientation:forward strand
Alignment:---AGCAATTTAA----
ACAAGCAATTAAAGAAT
 A C G T A C G T A C G T C G T A T C A G A G T C G T C A T C G A A G C T C A G T A G C T G C T A C G T A A C G T A C G T A C G T A C G T
T C G A A T G C T G C A T C G A C A T G G A T C C T G A G T C A C G A T G A C T C G T A C G T A G C T A C T A G T C G A C G T A C A G T

PB0066.1_Sox17_1/Jaspar

Match Rank:5
Score:0.75
Offset:-3
Orientation:forward strand
Alignment:---AGCAATTTAA--
ATAAACAATTAAACA
 A C G T A C G T A C G T C G T A T C A G A G T C G T C A T C G A A G C T C A G T A G C T G C T A C G T A A C G T A C G T
T G C A C G A T C T G A C G T A C G T A A G T C C G T A C G T A C G A T C G A T T C G A G C T A G C A T G A T C C G T A

Hmx2/MA0897.1/Jaspar

Match Rank:6
Score:0.74
Offset:-3
Orientation:forward strand
Alignment:---AGCAATTTAA----
ACAAGCAATTAAAGAAT
 A C G T A C G T A C G T C G T A T C A G A G T C G T C A T C G A A G C T C A G T A G C T G C T A C G T A A C G T A C G T A C G T A C G T
T C G A T A G C T G C A C T G A T C A G G A T C C T G A G T C A C G A T G A C T C G T A C G T A G C T A T C A G T C G A C T G A C A G T

PH0042.1_Hmx2/Jaspar

Match Rank:7
Score:0.74
Offset:-3
Orientation:forward strand
Alignment:---AGCAATTTAA----
ACAAGCAATTAAAGAAT
 A C G T A C G T A C G T C G T A T C A G A G T C G T C A T C G A A G C T C A G T A G C T G C T A C G T A A C G T A C G T A C G T A C G T
T C G A T A G C T G C A C T G A T C A G G A T C C T G A G T C A C G A T G A C T C G T A C G T A G C T A T C A G T C G A C T G A C A G T

PB0042.1_Mafk_1/Jaspar

Match Rank:8
Score:0.69
Offset:-5
Orientation:reverse strand
Alignment:-----AGCAATTTAA
AAGTCAGCANTTTTN
 A C G T A C G T A C G T A C G T A C G T C G T A T C A G A G T C G T C A T C G A A G C T C A G T A G C T G C T A C G T A
C T G A C G T A T C A G C G A T G T A C C G T A C A T G G T A C C T G A G C A T C G A T G C A T G C A T G C A T G C T A

PB0068.1_Sox1_1/Jaspar

Match Rank:9
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-AGCAATTTAA-----
AATCAATTCAATAATT
 A C G T C G T A T C A G A G T C G T C A T C G A A G C T C A G T A G C T G C T A C G T A A C G T A C G T A C G T A C G T A C G T
G C A T C G T A C A G T G A T C G C T A G C T A G C A T C G A T T A G C G C T A G C T A G C A T C G T A G T C A C G A T A C G T

PB0175.1_Sox4_2/Jaspar

Match Rank:10
Score:0.68
Offset:-5
Orientation:reverse strand
Alignment:-----AGCAATTTAA--
TNCNNAACAATTTTTNC
 A C G T A C G T A C G T A C G T A C G T C G T A T C A G A G T C G T C A T C G A A G C T C A G T A G C T G C T A C G T A A C G T A C G T
G A C T G A C T G A T C A T G C G A C T C T G A C G T A A G T C C G T A C T G A G A C T G A C T G A C T G A C T C G A T A G T C A T G C