Information for 3-GCGCTCTTCAGTG (Motif 4)

A C T G A G T C A C T G T A G C A G C T A G T C A G C T G A C T G T A C C G T A A C T G C G A T A C T G
Reverse Opposite:
A G T C C G T A A G T C A C G T A C T G C G T A C T G A C T A G C T G A A C T G T A G C C T A G A G T C
p-value:1e-12
log p-value:-2.901e+01
Information Content per bp:1.807
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.05%
Number of Background Sequences with motif9.9
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets53.8 +/- 26.3bp
Average Position of motif in Background70.8 +/- 24.3bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:1
Score:0.63
Offset:5
Orientation:reverse strand
Alignment:GCGCTCTTCAGTG--
-----CTYRAGTGSY
 A C T G A G T C A C T G T A G C A G C T A G T C A G C T G A C T G T A C C G T A A C T G C G A T A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A T G C G C A T A G C T C T A G C G T A A C T G C G A T C T A G A T G C G A T C

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:2
Score:0.62
Offset:5
Orientation:forward strand
Alignment:GCGCTCTTCAGTG--
-----BTBRAGTGSN
 A C T G A G T C A C T G T A G C A G C T A G T C A G C T G A C T G T A C C G T A A C T G C G A T A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A T G C G A C T A G C T C T A G C G T A C T A G C G A T C T A G A T C G G A T C

PB0091.1_Zbtb3_1/Jaspar

Match Rank:3
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:GCGCTCTTCAGTG-----
-NNNANTGCAGTGCNNTT
 A C T G A G T C A C T G T A G C A G C T A G T C A G C T G A C T G T A C C G T A A C T G C G A T A C T G A C G T A C G T A C G T A C G T A C G T
A C G T T G A C T A C G T A C G T G C A T C G A A C G T T A C G G T A C C G T A A T C G A G C T C A T G T A G C T A C G T C G A G A C T G A C T

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:4
Score:0.61
Offset:6
Orientation:reverse strand
Alignment:GCGCTCTTCAGTG---
------TTGAGTGSTT
 A C T G A G T C A C T G T A G C A G C T A G T C A G C T G A C T G T A C C G T A A C T G C G A T A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G C A T A C G T C T A G C G T A C A T G C G A T C T A G A T C G G A C T G A C T

NKX3-2/MA0122.2/Jaspar

Match Rank:5
Score:0.60
Offset:6
Orientation:reverse strand
Alignment:GCGCTCTTCAGTG--
------TTAAGTGGN
 A C T G A G T C A C T G T A G C A G C T A G T C A G C T G A C T G T A C C G T A A C T G C G A T A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G A C T C G A T C T G A T C G A C A T G C G A T C T A G A T C G A G C T

Nkx3-1/MA0124.2/Jaspar

Match Rank:6
Score:0.60
Offset:6
Orientation:reverse strand
Alignment:GCGCTCTTCAGTG--
------TTAAGTGGT
 A C T G A G T C A C T G T A G C A G C T A G T C A G C T G A C T G T A C C G T A A C T G C G A T A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G A C T C G A T C T G A C T G A A C T G C G A T T C A G A T C G A G C T

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:7
Score:0.60
Offset:5
Orientation:reverse strand
Alignment:GCGCTCTTCAGTG---
-----CTTGAGTGGCT
 A C T G A G T C A C T G T A G C A G C T A G T C A G C T G A C T G T A C C G T A A C T G C G A T A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A T G C G A C T C A G T C T A G C G T A A C T G C G A T A C T G A T C G G A T C G A C T

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:8
Score:0.60
Offset:6
Orientation:forward strand
Alignment:GCGCTCTTCAGTG---
------TTRAGTGSYK
 A C T G A G T C A C T G T A G C A G C T A G T C A G C T G A C T G T A C C G T A A C T G C G A T A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A G C T G A C T C T A G C G T A C A T G C G A T C T A G A T C G G A C T C A G T

NKX2-3/MA0672.1/Jaspar

Match Rank:9
Score:0.60
Offset:5
Orientation:reverse strand
Alignment:GCGCTCTTCAGTG--
-----NTCAAGTGGN
 A C T G A G T C A C T G T A G C A G C T A G T C A G C T G A C T G T A C C G T A A C T G C G A T A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A G C T G C A T A G T C C T G A G T C A A C T G C G A T C T A G A T C G A C G T

NKX2-8/MA0673.1/Jaspar

Match Rank:10
Score:0.59
Offset:5
Orientation:reverse strand
Alignment:GCGCTCTTCAGTG-
-----NTCAAGTGG
 A C T G A G T C A C T G T A G C A G C T A G T C A G C T G A C T G T A C C G T A A C T G C G A T A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A G C T C G A T A T G C C T G A C T G A C T A G C A G T C T A G A T C G