Information for 1-KTTTRTGMKGYTTTTK (Motif 2)

A C T G A C G T A C G T A C G T C T G A A C G T A C T G G T A C A C G T A C T G A G T C C G A T A C G T C G A T A C G T A C G T
Reverse Opposite:
G T C A C G T A C G T A G T C A C G T A C T A G A G T C G T C A A C T G G T A C C G T A A G C T C G T A C G T A G T C A G T A C
p-value:1e-13
log p-value:-3.047e+01
Information Content per bp:1.841
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.70%
Number of Background Sequences with motif0.5
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets35.8 +/- 15.5bp
Average Position of motif in Background20.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer

Match Rank:1
Score:0.58
Offset:-6
Orientation:forward strand
Alignment:------KTTTRTGMKGYTTTTK
ACTYKNATTCGTGNTACTTC--
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C G T A C G T A C G T C T G A A C G T A C T G G T A C A C G T A C T G A G T C C G A T A C G T C G A T A C G T A C G T
C T G A G T A C G A C T A G T C C A G T T G C A C T G A A C G T A G C T G A T C C T A G C G A T A C T G A T G C G A C T C T G A G A T C G A C T A G C T G A T C A C G T A C G T

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:2
Score:0.57
Offset:0
Orientation:forward strand
Alignment:KTTTRTGMKGYTTTTK
TTTTATKRGG------
 A C T G A C G T A C G T A C G T C T G A A C G T A C T G G T A C A C G T A C T G A G T C C G A T A C G T C G A T A C G T A C G T
C G A T A C G T A C G T A C G T C G T A A G C T C A G T C T A G A T C G A C T G A C G T A C G T A C G T A C G T A C G T A C G T

RUNX3/MA0684.1/Jaspar

Match Rank:3
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:KTTTRTGMKGYTTTTK
---TTTGCGGTTT---
 A C T G A C G T A C G T A C G T C T G A A C G T A C T G G T A C A C G T A C T G A G T C C G A T A C G T C G A T A C G T A C G T
A C G T A C G T A C G T C G A T A G C T A C G T T A C G A G T C A T C G A C T G A C G T A G C T C G A T A C G T A C G T A C G T

PH0068.1_Hoxc13/Jaspar

Match Rank:4
Score:0.54
Offset:-3
Orientation:reverse strand
Alignment:---KTTTRTGMKGYTTTTK
NAATTTTACGAGNTNN---
 A C G T A C G T A C G T A C T G A C G T A C G T A C G T C T G A A C G T A C T G G T A C A C G T A C T G A G T C C G A T A C G T C G A T A C G T A C G T
G C T A C T G A C G T A C G A T C G A T C G A T C G A T C T G A G A T C C T A G C T G A A T C G T G A C C G A T C G A T C G A T A C G T A C G T A C G T

PB0123.1_Foxl1_2/Jaspar

Match Rank:5
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--KTTTRTGMKGYTTTTK
NNTTTTGTTTTGATNT--
 A C G T A C G T A C T G A C G T A C G T A C G T C T G A A C G T A C T G G T A C A C G T A C T G A G T C C G A T A C G T C G A T A C G T A C G T
C A G T C A T G G A C T C A G T G C A T G C A T T C A G A C G T C A G T C G A T C A G T C T A G G C T A G C A T G C T A C G A T A C G T A C G T

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:6
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--KTTTRTGMKGYTTTTK
DGWTTTATGRCN------
 A C G T A C G T A C T G A C G T A C G T A C G T C T G A A C G T A C T G G T A C A C G T A C T G A G T C C G A T A C G T C G A T A C G T A C G T
C A G T C A T G G C A T C G A T C G A T C G A T C T G A A G C T C A T G C T A G A G T C A T G C A C G T A C G T A C G T A C G T A C G T A C G T

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:7
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-KTTTRTGMKGYTTTTK
NTTTTATGAC-------
 A C G T A C T G A C G T A C G T A C G T C T G A A C G T A C T G G T A C A C G T A C T G A G T C C G A T A C G T C G A T A C G T A C G T
C T G A C G A T A C G T A C G T A C G T C G T A A C G T C A T G C T G A A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0146.1_Mafk_2/Jaspar

Match Rank:8
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:KTTTRTGMKGYTTTTK-
--CCTTGCAATTTTTNN
 A C T G A C G T A C G T A C G T C T G A A C G T A C T G G T A C A C G T A C T G A G T C C G A T A C G T C G A T A C G T A C G T A C G T
A C G T A C G T A G T C T A G C C A G T A C G T C T A G G T A C C T G A G T C A C G A T C G A T G A C T G A C T A G C T C A G T A G T C

PH0048.1_Hoxa13/Jaspar

Match Rank:9
Score:0.52
Offset:-3
Orientation:reverse strand
Alignment:---KTTTRTGMKGYTTTTK
ANATTTTACGAGNNNN---
 A C G T A C G T A C G T A C T G A C G T A C G T A C G T C T G A A C G T A C T G G T A C A C G T A C T G A G T C C G A T A C G T C G A T A C G T A C G T
G C T A T C G A C G T A C G A T C A G T C G A T C G A T C T G A A G T C C T A G C T G A A T C G T A C G C G A T G C A T C G A T A C G T A C G T A C G T

PB0130.1_Gm397_2/Jaspar

Match Rank:10
Score:0.52
Offset:-4
Orientation:reverse strand
Alignment:----KTTTRTGMKGYTTTTK
NNGCGTGTGTGCNGCN----
 A C G T A C G T A C G T A C G T A C T G A C G T A C G T A C G T C T G A A C G T A C T G G T A C A C G T A C T G A G T C C G A T A C G T C G A T A C G T A C G T
C A G T A C G T C T A G T G A C C A T G A C G T T A C G A G C T C A T G A G C T A C T G A G T C A G T C C A T G A G T C G A C T A C G T A C G T A C G T A C G T