Information for 10-TGTGCAAGACATG (Motif 17)

A C G T A C T G A C G T A C T G G T A C G T C A C G T A C T A G C G T A A G T C C G T A A C G T A C T G
Reverse Opposite:
A G T C C G T A A C G T A C T G A C G T A G T C A C G T A C G T A C T G A G T C C G T A A G T C C G T A
p-value:1e-8
log p-value:-1.911e+01
Information Content per bp:1.924
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.47%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets37.2 +/- 22.4bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-TGTGCAAGACATG
AGGTGHCAGACA--
 A C G T A C G T A C T G A C G T A C T G G T A C G T C A C G T A C T A G C G T A A G T C C G T A A C G T A C T G
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:2
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-TGTGCAAGACATG
AGGTGNCAGACAG-
 A C G T A C G T A C T G A C G T A C T G G T A C G T C A C G T A C T A G C G T A A G T C C G T A A C G T A C T G
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:3
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-TGTGCAAGACATG---
CAAATCCAGACATCACA
 A C G T A C G T A C T G A C G T A C T G G T A C G T C A C G T A C T A G C G T A A G T C C G T A A C G T A C T G A C G T A C G T A C G T
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

PB0044.1_Mtf1_1/Jaspar

Match Rank:4
Score:0.55
Offset:-6
Orientation:forward strand
Alignment:------TGTGCAAGACATG
GGGCCGTGTGCAAAAA---
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C G T A C T G G T A C G T C A C G T A C T A G C G T A A G T C C G T A A C G T A C T G
C A T G A C T G C T A G G A T C G T A C C A T G C A G T A C T G G A C T C A T G G T A C C G T A T G C A G T C A C T G A G C A T A C G T A C G T A C G T

CEBPA/MA0102.3/Jaspar

Match Rank:5
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---TGTGCAAGACATG
NATTGTGCAAT-----
 A C G T A C G T A C G T A C G T A C T G A C G T A C T G G T A C G T C A C G T A C T A G C G T A A G T C C G T A A C G T A C T G
C A G T T C G A A C G T A C G T C T A G A C G T A C T G G T A C C G T A C G T A A G C T A C G T A C G T A C G T A C G T A C G T

PB0141.1_Isgf3g_2/Jaspar

Match Rank:6
Score:0.53
Offset:3
Orientation:forward strand
Alignment:TGTGCAAGACATG----
---GCAAAACATTACTA
 A C G T A C T G A C G T A C T G G T A C G T C A C G T A C T A G C G T A A G T C C G T A A C G T A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C T G T A G C C G T A C G T A C G T A C T G A T A G C C G T A A C G T C A G T C G T A G T A C G A C T C T G A

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.53
Offset:4
Orientation:reverse strand
Alignment:TGTGCAAGACATG-
----CCAGACRSVB
 A C G T A C T G A C G T A C T G G T A C G T C A C G T A C T A G C G T A A G T C C G T A A C G T A C T G A C G T
A C G T A C G T A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

PH0084.1_Irx3_2/Jaspar

Match Rank:8
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:TGTGCAAGACATG------
--NNTATTACATGTANNNT
 A C G T A C T G A C G T A C T G G T A C G T C A C G T A C T A G C G T A A G T C C G T A A C G T A C T G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G C A T C T G A G C A T G C T A A C G T C G A T C G T A G A T C C G T A G C A T C T A G C G A T G C T A C G A T G C T A G C A T G C A T

PH0083.1_Irx3_1/Jaspar

Match Rank:9
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:TGTGCAAGACATG------
--ANTATTACATGTANNNN
 A C G T A C T G A C G T A C T G G T A C G T C A C G T A C T A G C G T A A G T C C G T A A C G T A C T G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G C T A C T A G G C A T G C T A A C G T C G A T C G T A A G T C C G T A G C A T T A C G C G A T G C T A A G C T G C A T G A C T G C A T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.52
Offset:4
Orientation:reverse strand
Alignment:TGTGCAAGACATG
----CCAGACAG-
 A C G T A C T G A C G T A C T G G T A C G T C A C G T A C T A G C G T A A G T C C G T A A C G T A C T G
A C G T A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T