Information for 2-TGCTTAGCAAACA (Motif 2)

A C G T T A C G A G T C C G A T A C G T C G T A A C T G A G T C C G T A T C G A C G T A G A T C C G T A
Reverse Opposite:
A C G T C A T G A C G T A C G T A C G T A C T G G T A C G C A T T G C A C G T A A C T G A G T C C G T A
p-value:1e-15
log p-value:-3.635e+01
Information Content per bp:1.790
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.18%
Number of Background Sequences with motif5.7
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets54.5 +/- 22.5bp
Average Position of motif in Background48.8 +/- 28.7bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer

Match Rank:1
Score:0.78
Offset:-2
Orientation:forward strand
Alignment:--TGCTTAGCAAACA--
NNNVCTGWGYAAACASN
 A C G T A C G T A C G T T A C G A G T C C G A T A C G T C G T A A C T G A G T C C G T A T C G A C G T A G A T C C G T A A C G T A C G T
A T G C C T G A A T C G T A C G A G T C C G A T T C A G C G A T C T A G A G C T G T C A G T C A C G T A A G T C C G T A T A C G C T G A

Foxa2/MA0047.2/Jaspar

Match Rank:2
Score:0.70
Offset:1
Orientation:reverse strand
Alignment:TGCTTAGCAAACA
-NCTAAGTAAACA
 A C G T T A C G A G T C C G A T A C G T C G T A A C T G A G T C C G T A T C G A C G T A G A T C C G T A
A C G T T A G C G T A C G C A T T C G A C G T A C T A G A G C T G T C A T G C A C G T A A G T C C G T A

FOXA1/MA0148.3/Jaspar

Match Rank:3
Score:0.69
Offset:2
Orientation:reverse strand
Alignment:TGCTTAGCAAACA----
--CAAAGTAAACANNNN
 A C G T T A C G A G T C C G A T A C G T C G T A A C T G A G T C C G T A T C G A C G T A G A T C C G T A A C G T A C G T A C G T A C G T
A C G T A C G T G T A C G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C G C T A C G A T T A C G T C A G C T G A

FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer

Match Rank:4
Score:0.68
Offset:3
Orientation:reverse strand
Alignment:TGCTTAGCAAACA
---WAAGTAAAYA
 A C G T T A C G A G T C C G A T A C G T C G T A A C T G A G T C C G T A T C G A C G T A G A T C C G T A
A C G T A C G T A C G T G C A T T C G A C T G A T C A G A G C T G T C A G T C A C T G A A G T C T G C A

Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer

Match Rank:5
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:TGCTTAGCAAACA---
-NCWRWGTAAACANSV
 A C G T T A C G A G T C C G A T A C G T C G T A A C T G A G T C C G T A T C G A C G T A G A T C C G T A A C G T A C G T A C G T
A C G T T G A C G A T C G C A T C T G A C G A T C T A G A G C T G T C A G T C A C G T A A G T C C G T A C G T A A T C G T C A G

FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:6
Score:0.67
Offset:3
Orientation:forward strand
Alignment:TGCTTAGCAAACA
---AAAGTAAACA
 A C G T T A C G A G T C C G A T A C G T C G T A A C T G A G T C C G T A T C G A C G T A G A T C C G T A
A C G T A C G T A C G T G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C C G T A

FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer

Match Rank:7
Score:0.67
Offset:3
Orientation:forward strand
Alignment:TGCTTAGCAAACA
---AAAGTAAACA
 A C G T T A C G A G T C C G A T A C G T C G T A A C T G A G T C C G T A T C G A C G T A G A T C C G T A
A C G T A C G T A C G T G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C C G T A

Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer

Match Rank:8
Score:0.65
Offset:3
Orientation:reverse strand
Alignment:TGCTTAGCAAACA--
---TATGTAAACANG
 A C G T T A C G A G T C C G A T A C G T C G T A A C T G A G T C C G T A T C G A C G T A G A T C C G T A A C G T A C G T
A C G T A C G T A C G T G C A T T C G A C G A T C T A G A G C T G T C A G T C A C G T A A G T C C G T A C T G A T A C G

FOXD2/MA0847.1/Jaspar

Match Rank:9
Score:0.65
Offset:6
Orientation:forward strand
Alignment:TGCTTAGCAAACA
------GTAAACA
 A C G T T A C G A G T C C G A T A C G T C G T A A C T G A G T C C G T A T C G A C G T A G A T C C G T A
A C G T A C G T A C G T A C G T A C G T A C G T T C A G G A C T G T C A G T C A C G T A A G T C C T G A

Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer

Match Rank:10
Score:0.65
Offset:5
Orientation:forward strand
Alignment:TGCTTAGCAAACA
-----DGTAAACA
 A C G T T A C G A G T C C G A T A C G T C G T A A C T G A G T C C G T A T C G A C G T A G A T C C G T A
A C G T A C G T A C G T A C G T A C G T C G A T C T A G A C G T G T C A C G T A C G T A A G T C C G T A