Information for 13-CAGCAGCACAAGA (Motif 26)

A G T C C G T A A C T G G T A C C G T A A C T G A T G C C G T A A G T C C G T A C G T A A C T G C G T A
Reverse Opposite:
A C G T A G T C A C G T A C G T A C T G A C G T A T C G A G T C A C G T A C T G A G T C A C G T C T A G
p-value:1e-8
log p-value:-2.061e+01
Information Content per bp:1.924
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.64%
Number of Background Sequences with motif1.4
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets28.2 +/- 15.5bp
Average Position of motif in Background78.8 +/- 4.0bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0208.1_Zscan4_2/Jaspar

Match Rank:1
Score:0.58
Offset:1
Orientation:forward strand
Alignment:CAGCAGCACAAGA----
-CGAAGCACACAAAATA
 A G T C C G T A A C T G G T A C C G T A A C T G A T G C C G T A A G T C C G T A C G T A A C T G C G T A A C G T A C G T A C G T A C G T
A C G T G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A

PB0050.1_Osr1_1/Jaspar

Match Rank:2
Score:0.58
Offset:-5
Orientation:forward strand
Alignment:-----CAGCAGCACAAGA
ATTTACAGTAGCAAAA--
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C T G G T A C C G T A A C T G A T G C C G T A A G T C C G T A C G T A A C T G C G T A
G C A T G C A T C G A T G C A T G T C A G A T C C T G A A C T G C G A T C T G A C T A G A G T C G C T A T G C A G C T A C T G A A C G T A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:3
Score:0.56
Offset:-5
Orientation:forward strand
Alignment:-----CAGCAGCACAAGA
CCACACAGCAGGAGA---
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C T G G T A C C G T A A C T G A T G C C G T A A G T C C G T A C G T A A C T G C G T A
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T A C G T A C G T

PB0207.1_Zic3_2/Jaspar

Match Rank:4
Score:0.55
Offset:-5
Orientation:forward strand
Alignment:-----CAGCAGCACAAGA
GAGCACAGCAGGACA---
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C T G G T A C C G T A A C T G A T G C C G T A A G T C C G T A C G T A A C T G C G T A
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A A C G T A C G T A C G T

PB0051.1_Osr2_1/Jaspar

Match Rank:5
Score:0.54
Offset:-5
Orientation:forward strand
Alignment:-----CAGCAGCACAAGA
ATGTACAGTAGCAAAG--
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C T G G T A C C G T A A C T G A T G C C G T A A G T C C G T A C G T A A C T G C G T A
G C A T C G A T T C A G G C A T G T C A G A T C C T G A A C T G C G A T C T G A A C T G A G T C G C T A G T C A G C T A C T A G A C G T A C G T

TFEC/MA0871.1/Jaspar

Match Rank:6
Score:0.54
Offset:4
Orientation:forward strand
Alignment:CAGCAGCACAAGA-
----ATCACGTGAC
 A G T C C G T A A C T G G T A C C G T A A C T G A T G C C G T A A G T C C G T A C G T A A C T G C G T A A C G T
A C G T A C G T A C G T A C G T T C G A C A G T G T A C C G T A A G T C T C A G G A C T A C T G T C G A A G T C

PB0206.1_Zic2_2/Jaspar

Match Rank:7
Score:0.54
Offset:-5
Orientation:forward strand
Alignment:-----CAGCAGCACAAGA
CCACACAGCAGGAGA---
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C T G G T A C C G T A A C T G A T G C C G T A A G T C C G T A C G T A A C T G C G T A
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T A C G T A C G T

PB0183.1_Sry_2/Jaspar

Match Rank:8
Score:0.53
Offset:0
Orientation:forward strand
Alignment:CAGCAGCACAAGA----
TCACGGAACAATAGGTG
 A G T C C G T A A C T G G T A C C G T A A C T G A T G C C G T A A G T C C G T A C G T A A C T G C G T A A C G T A C G T A C G T A C G T
G A C T G A T C C G T A G T A C C A T G T C A G T G C A C G T A A G T C C T G A C G T A G C A T C T G A C T A G T C A G G A C T T A C G

PB0173.1_Sox21_2/Jaspar

Match Rank:9
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:CAGCAGCACAAGA----
NNNNNGAACAATTGANN
 A G T C C G T A A C T G G T A C C G T A A C T G A T G C C G T A A G T C C G T A C G T A A C T G C G T A A C G T A C G T A C G T A C G T
A G C T G T C A C T A G G T A C A C T G T A C G T C G A C G T A A T G C C G T A T C G A G C A T C G A T T A C G T C G A A G C T A C G T

Mecom/MA0029.1/Jaspar

Match Rank:10
Score:0.52
Offset:4
Orientation:forward strand
Alignment:CAGCAGCACAAGA-----
----AAGATAAGATAACA
 A G T C C G T A A C T G G T A C C G T A A C T G A T G C C G T A A G T C C G T A C G T A A C T G C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C T G A C G T A A C T G C G T A G A C T C G T A C T G A A C T G C G T A A G C T G C T A C T G A A C G T G T C A