Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 749)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 46625)	% of Background Sequences with Motif
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e-92	-2.122e+02	0.0000	204.0	27.24%	2224.0	4.77%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e-85	-1.958e+02	0.0000	222.0	29.64%	2944.4	6.31%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e-84	-1.937e+02	0.0000	203.0	27.10%	2444.2	5.24%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-72	-1.673e+02	0.0000	138.0	18.42%	1191.8	2.55%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e-70	-1.630e+02	0.0000	157.0	20.96%	1670.2	3.58%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e-70	-1.625e+02	0.0000	275.0	36.72%	5391.3	11.55%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e-66	-1.543e+02	0.0000	174.0	23.23%	2233.5	4.79%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e-58	-1.338e+02	0.0000	85.0	11.35%	481.9	1.03%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-55	-1.275e+02	0.0000	109.0	14.55%	975.1	2.09%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-54	-1.265e+02	0.0000	154.0	20.56%	2117.4	4.54%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-53	-1.239e+02	0.0000	148.0	19.76%	1990.1	4.27%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-50	-1.162e+02	0.0000	192.0	25.63%	3531.8	7.57%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-50	-1.158e+02	0.0000	129.0	17.22%	1599.1	3.43%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-48	-1.121e+02	0.0000	138.0	18.42%	1904.2	4.08%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)	NNAYTTCCTGHN	1e-48	-1.107e+02	0.0000	136.0	18.16%	1872.9	4.01%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-47	-1.089e+02	0.0000	170.0	22.70%	2955.3	6.33%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e-46	-1.064e+02	0.0000	122.0	16.29%	1555.7	3.33%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-44	-1.024e+02	0.0000	147.0	19.63%	2353.7	5.04%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-40	-9.219e+01	0.0000	157.0	20.96%	2911.4	6.24%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e-37	-8.736e+01	0.0000	61.0	8.14%	402.8	0.86%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-37	-8.529e+01	0.0000	162.0	21.63%	3268.0	7.00%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e-34	-7.971e+01	0.0000	75.0	10.01%	753.0	1.61%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e-34	-7.879e+01	0.0000	67.0	8.95%	589.6	1.26%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e-29	-6.736e+01	0.0000	69.0	9.21%	766.2	1.64%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-28	-6.553e+01	0.0000	127.0	16.96%	2566.6	5.50%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-26	-6.059e+01	0.0000	73.0	9.75%	968.9	2.08%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-26	-5.996e+01	0.0000	91.0	12.15%	1503.2	3.22%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e-23	-5.462e+01	0.0000	129.0	17.22%	2978.7	6.38%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e-21	-4.963e+01	0.0000	64.0	8.54%	909.7	1.95%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-20	-4.734e+01	0.0000	51.0	6.81%	602.6	1.29%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-19	-4.594e+01	0.0000	69.0	9.21%	1128.4	2.42%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e-15	-3.662e+01	0.0000	103.0	13.75%	2624.3	5.62%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e-15	-3.628e+01	0.0000	46.0	6.14%	647.9	1.39%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-15	-3.616e+01	0.0000	89.0	11.88%	2094.7	4.49%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e-14	-3.233e+01	0.0000	185.0	24.70%	6566.9	14.07%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-13	-3.206e+01	0.0000	95.0	12.68%	2490.7	5.34%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e-13	-3.017e+01	0.0000	32.0	4.27%	378.8	0.81%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e-13	-3.009e+01	0.0000	55.0	7.34%	1060.3	2.27%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-12	-2.861e+01	0.0000	55.0	7.34%	1101.9	2.36%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e-11	-2.675e+01	0.0000	19.0	2.54%	137.0	0.29%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e-11	-2.616e+01	0.0000	112.0	14.95%	3511.8	7.53%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e-11	-2.596e+01	0.0000	26.0	3.47%	291.2	0.62%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e-10	-2.426e+01	0.0000	131.0	17.49%	4511.8	9.67%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e-9	-2.284e+01	0.0000	50.0	6.68%	1101.4	2.36%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e-9	-2.246e+01	0.0000	107.0	14.29%	3506.2	7.51%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e-8	-2.045e+01	0.0000	67.0	8.95%	1859.2	3.98%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e-8	-2.010e+01	0.0000	81.0	10.81%	2476.9	5.31%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e-8	-1.983e+01	0.0000	72.0	9.61%	2100.8	4.50%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-8	-1.950e+01	0.0000	48.0	6.41%	1143.1	2.45%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-8	-1.944e+01	0.0000	87.0	11.62%	2781.9	5.96%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e-7	-1.721e+01	0.0000	40.0	5.34%	926.1	1.98%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e-7	-1.708e+01	0.0000	30.0	4.01%	577.5	1.24%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e-6	-1.577e+01	0.0000	57.0	7.61%	1670.7	3.58%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e-6	-1.521e+01	0.0000	35.0	4.67%	811.8	1.74%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e-6	-1.462e+01	0.0000	91.0	12.15%	3299.8	7.07%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e-6	-1.429e+01	0.0000	45.0	6.01%	1241.1	2.66%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e-6	-1.417e+01	0.0000	15.0	2.00%	189.4	0.41%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-6	-1.395e+01	0.0000	69.0	9.21%	2310.5	4.95%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e-5	-1.378e+01	0.0000	37.0	4.94%	942.6	2.02%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e-5	-1.376e+01	0.0000	75.0	10.01%	2602.8	5.58%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e-5	-1.366e+01	0.0000	91.0	12.15%	3376.5	7.24%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-5	-1.347e+01	0.0000	52.0	6.94%	1579.3	3.38%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-5	-1.337e+01	0.0000	243.0	32.44%	11575.4	24.81%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e-5	-1.312e+01	0.0000	53.0	7.08%	1642.8	3.52%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e-5	-1.185e+01	0.0000	53.0	7.08%	1719.6	3.69%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e-5	-1.175e+01	0.0000	56.0	7.48%	1861.1	3.99%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e-4	-1.141e+01	0.0001	57.0	7.61%	1930.5	4.14%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e-4	-1.107e+01	0.0001	12.0	1.60%	160.6	0.34%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e-4	-1.075e+01	0.0001	24.0	3.20%	561.4	1.20%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e-4	-1.006e+01	0.0002	35.0	4.67%	1033.2	2.21%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e-4	-9.993e+00	0.0002	53.0	7.08%	1844.1	3.95%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-4	-9.855e+00	0.0003	61.0	8.14%	2234.1	4.79%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e-4	-9.434e+00	0.0004	18.0	2.40%	387.1	0.83%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e-3	-9.076e+00	0.0006	20.0	2.67%	472.6	1.01%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e-3	-8.406e+00	0.0011	15.0	2.00%	313.6	0.67%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e-3	-8.328e+00	0.0012	37.0	4.94%	1222.8	2.62%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e-3	-8.105e+00	0.0014	93.0	12.42%	4032.8	8.64%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-3	-8.032e+00	0.0015	101.0	13.48%	4466.1	9.57%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e-3	-7.385e+00	0.0029	42.0	5.61%	1522.5	3.26%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-3	-7.180e+00	0.0035	8.0	1.07%	118.0	0.25%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e-3	-7.056e+00	0.0039	22.0	2.94%	638.6	1.37%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-3	-7.014e+00	0.0040	9.0	1.20%	151.2	0.32%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e-2	-6.816e+00	0.0048	11.0	1.47%	221.6	0.47%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e-2	-6.505e+00	0.0065	7.0	0.93%	102.9	0.22%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e-2	-5.904e+00	0.0117	8.0	1.07%	145.3	0.31%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e-2	-5.712e+00	0.0140	15.0	2.00%	412.6	0.88%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-2	-5.662e+00	0.0145	8.0	1.07%	151.7	0.33%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e-2	-5.432e+00	0.0181	15.0	2.00%	425.7	0.91%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e-2	-5.263e+00	0.0212	42.0	5.61%	1713.1	3.67%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e-2	-5.213e+00	0.0220	18.0	2.40%	565.7	1.21%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e-2	-5.182e+00	0.0225	17.0	2.27%	523.7	1.12%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-2	-5.023e+00	0.0261	14.0	1.87%	403.2	0.86%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e-2	-4.943e+00	0.0279	155.0	20.69%	8016.1	17.18%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e-2	-4.832e+00	0.0309	3.0	0.40%	25.4	0.05%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e-2	-4.817e+00	0.0310	25.0	3.34%	914.5	1.96%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-2	-4.697e+00	0.0346	28.0	3.74%	1069.4	2.29%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e-2	-4.609e+00	0.0374	59.0	7.88%	2682.6	5.75%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-1	-4.555e+00	0.0390	9.0	1.20%	221.0	0.47%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e-1	-4.478e+00	0.0418	63.0	8.41%	2917.1	6.25%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e-1	-4.273e+00	0.0507	25.0	3.34%	959.8	2.06%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e-1	-4.203e+00	0.0539	19.0	2.54%	676.8	1.45%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e-1	-4.149e+00	0.0563	57.0	7.61%	2641.1	5.66%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-1	-4.057e+00	0.0611	28.0	3.74%	1128.2	2.42%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e-1	-3.878e+00	0.0725	11.0	1.47%	333.3	0.71%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e-1	-3.857e+00	0.0733	16.0	2.14%	560.9	1.20%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e-1	-3.628e+00	0.0912	7.0	0.93%	178.2	0.38%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-1	-3.622e+00	0.0912	10.0	1.34%	303.1	0.65%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e-1	-3.588e+00	0.0932	154.0	20.56%	8296.5	17.78%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e-1	-3.514e+00	0.0995	39.0	5.21%	1763.3	3.78%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-1	-3.466e+00	0.1034	12.0	1.60%	401.3	0.86%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e-1	-3.454e+00	0.1037	8.0	1.07%	226.6	0.49%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e-1	-3.367e+00	0.1121	21.0	2.80%	843.1	1.81%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-1	-3.345e+00	0.1136	26.0	3.47%	1100.9	2.36%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-1	-3.279e+00	0.1203	15.0	2.00%	555.8	1.19%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e-1	-3.194e+00	0.1298	25.0	3.34%	1065.8	2.28%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e-1	-3.152e+00	0.1342	15.0	2.00%	565.7	1.21%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e-1	-3.103e+00	0.1397	7.0	0.93%	200.5	0.43%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e-1	-3.069e+00	0.1433	6.0	0.80%	160.0	0.34%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e-1	-2.998e+00	0.1526	9.0	1.20%	293.6	0.63%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e-1	-2.996e+00	0.1526	7.0	0.93%	205.8	0.44%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-1	-2.964e+00	0.1552	38.0	5.07%	1788.8	3.83%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e-1	-2.899e+00	0.1644	10.0	1.34%	345.0	0.74%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e-1	-2.893e+00	0.1644	12.0	1.60%	440.0	0.94%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e-1	-2.842e+00	0.1712	96.0	12.82%	5103.8	10.94%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e-1	-2.800e+00	0.1771	16.0	2.14%	645.6	1.38%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e-1	-2.799e+00	0.1771	9.0	1.20%	305.5	0.65%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-1	-2.774e+00	0.1789	27.0	3.60%	1221.3	2.62%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e-1	-2.760e+00	0.1800	62.0	8.28%	3165.2	6.78%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e-1	-2.705e+00	0.1887	16.0	2.14%	654.2	1.40%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e-1	-2.702e+00	0.1887	139.0	18.56%	7673.5	16.45%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e-1	-2.676e+00	0.1912	20.0	2.67%	863.5	1.85%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e-1	-2.656e+00	0.1937	15.0	2.00%	609.0	1.31%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e-1	-2.625e+00	0.1983	7.0	0.93%	224.3	0.48%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e-1	-2.596e+00	0.2025	26.0	3.47%	1191.7	2.55%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e-1	-2.583e+00	0.2038	103.0	13.75%	5583.4	11.97%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e-1	-2.558e+00	0.2073	71.0	9.48%	3726.4	7.99%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-1	-2.532e+00	0.2112	43.0	5.74%	2137.9	4.58%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e-1	-2.493e+00	0.2180	46.0	6.14%	2313.9	4.96%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e-1	-2.471e+00	0.2213	13.0	1.74%	524.5	1.12%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e-1	-2.407e+00	0.2343	10.0	1.34%	380.5	0.82%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-1	-2.392e+00	0.2360	23.0	3.07%	1057.2	2.27%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e-1	-2.349e+00	0.2447	6.0	0.80%	194.3	0.42%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e-1	-2.342e+00	0.2448	24.0	3.20%	1118.6	2.40%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-2.199e+00	0.2804	3.0	0.40%	72.1	0.15%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-2.182e+00	0.2831	29.0	3.87%	1417.2	3.04%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-2.171e+00	0.2845	27.0	3.60%	1308.3	2.80%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-2.157e+00	0.2866	8.0	1.07%	301.3	0.65%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e0	-2.146e+00	0.2878	41.0	5.47%	2099.4	4.50%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e0	-2.132e+00	0.2899	4.0	0.53%	116.5	0.25%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-2.043e+00	0.3124	4.0	0.53%	120.3	0.26%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-2.043e+00	0.3124	4.0	0.53%	120.3	0.26%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e0	-2.033e+00	0.3134	111.0	14.82%	6231.4	13.35%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e0	-2.032e+00	0.3134	18.0	2.40%	835.3	1.79%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-1.881e+00	0.3602	2.0	0.27%	43.6	0.09%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-1.875e+00	0.3603	5.0	0.67%	175.4	0.38%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-1.866e+00	0.3612	14.0	1.87%	640.2	1.37%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-1.822e+00	0.3748	3.0	0.40%	86.0	0.18%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e0	-1.807e+00	0.3781	39.0	5.21%	2057.2	4.41%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e0	-1.796e+00	0.3799	44.0	5.87%	2349.3	5.04%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e0	-1.792e+00	0.3799	42.0	5.61%	2234.0	4.79%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	-1.777e+00	0.3826	2.0	0.27%	47.0	0.10%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e0	-1.766e+00	0.3841	15.0	2.00%	707.0	1.52%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e0	-1.729e+00	0.3961	15.0	2.00%	712.8	1.53%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-1.706e+00	0.4031	43.0	5.74%	2313.7	4.96%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-1.704e+00	0.4031	60.0	8.01%	3311.6	7.10%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e0	-1.697e+00	0.4031	85.0	11.35%	4798.5	10.28%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-1.665e+00	0.4125	3.0	0.40%	93.2	0.20%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e0	-1.567e+00	0.4520	7.0	0.93%	299.9	0.64%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	-1.543e+00	0.4604	3.0	0.40%	99.4	0.21%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-1.433e+00	0.5110	68.0	9.08%	3875.9	8.31%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-1.401e+00	0.5243	56.0	7.48%	3168.6	6.79%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-1.398e+00	0.5243	8.0	1.07%	371.0	0.80%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-1.374e+00	0.5327	5.0	0.67%	211.5	0.45%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e0	-1.338e+00	0.5491	2.0	0.27%	62.3	0.13%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-1.280e+00	0.5783	4.0	0.53%	166.2	0.36%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-1.270e+00	0.5806	9.0	1.20%	441.2	0.95%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-1.265e+00	0.5806	15.0	2.00%	784.1	1.68%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-1.258e+00	0.5813	25.0	3.34%	1369.7	2.94%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-1.235e+00	0.5912	62.0	8.28%	3587.0	7.69%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-1.231e+00	0.5912	10.0	1.34%	503.0	1.08%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-1.207e+00	0.6013	3.0	0.40%	119.1	0.26%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-1.193e+00	0.6067	3.0	0.40%	120.6	0.26%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e0	-1.186e+00	0.6076	27.0	3.60%	1505.4	3.23%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-1.167e+00	0.6158	11.0	1.47%	570.8	1.22%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-1.146e+00	0.6254	24.0	3.20%	1337.7	2.87%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-1.142e+00	0.6254	11.0	1.47%	574.8	1.23%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e0	-1.138e+00	0.6254	34.0	4.54%	1936.8	4.15%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e0	-1.135e+00	0.6254	2.0	0.27%	72.7	0.16%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-1.118e+00	0.6297	14.0	1.87%	753.1	1.61%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-1.031e+00	0.6829	21.0	2.80%	1188.0	2.55%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-1.031e+00	0.6829	23.0	3.07%	1307.1	2.80%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e0	-1.029e+00	0.6829	6.0	0.80%	302.4	0.65%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e0	-1.021e+00	0.6829	6.0	0.80%	303.4	0.65%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-1.009e+00	0.6839	12.0	1.60%	656.6	1.41%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	-1.003e+00	0.6844	11.0	1.47%	598.4	1.28%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-9.910e-01	0.6894	4.0	0.53%	192.6	0.41%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e0	-9.905e-01	0.6894	6.0	0.80%	307.5	0.66%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-9.807e-01	0.6895	13.0	1.74%	721.5	1.55%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-9.118e-01	0.7350	1.0	0.13%	32.9	0.07%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	-8.883e-01	0.7487	1.0	0.13%	33.5	0.07%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e0	-8.588e-01	0.7634	2.0	0.27%	90.4	0.19%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-8.588e-01	0.7634	2.0	0.27%	90.2	0.19%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-8.478e-01	0.7681	100.0	13.35%	6102.2	13.08%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-8.441e-01	0.7681	1.0	0.13%	35.5	0.08%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	-8.441e-01	0.7681	1.0	0.13%	35.4	0.08%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e0	-8.395e-01	0.7681	27.0	3.60%	1607.3	3.44%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-8.388e-01	0.7681	92.0	12.28%	5613.4	12.03%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	-8.134e-01	0.7759	19.0	2.54%	1125.0	2.41%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-8.009e-01	0.7819	13.0	1.74%	761.8	1.63%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-7.980e-01	0.7819	6.0	0.80%	335.6	0.72%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e0	-7.798e-01	0.7910	15.0	2.00%	889.9	1.91%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-7.557e-01	0.8064	6.0	0.80%	342.7	0.73%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-7.341e-01	0.8202	44.0	5.87%	2699.9	5.79%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e0	-7.286e-01	0.8208	67.0	8.95%	4130.2	8.85%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-7.282e-01	0.8208	18.0	2.40%	1089.9	2.34%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-6.981e-01	0.8384	29.0	3.87%	1783.1	3.82%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	-6.903e-01	0.8411	53.0	7.08%	3281.4	7.03%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-6.814e-01	0.8447	3.0	0.40%	168.3	0.36%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e0	-6.644e-01	0.8553	1.0	0.13%	45.8	0.10%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-6.538e-01	0.8605	21.0	2.80%	1301.7	2.79%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	-6.499e-01	0.8605	34.0	4.54%	2116.9	4.54%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e0	-6.436e-01	0.8615	3.0	0.40%	173.2	0.37%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e0	-6.202e-01	0.8779	30.0	4.01%	1879.8	4.03%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-6.079e-01	0.8848	5.0	0.67%	306.7	0.66%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e0	-6.042e-01	0.8848	39.0	5.21%	2452.8	5.26%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e0	-5.996e-01	0.8848	35.0	4.67%	2203.2	4.72%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e0	-5.871e-01	0.8914	5.0	0.67%	310.7	0.67%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-5.792e-01	0.8946	2.0	0.27%	117.9	0.25%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e0	-5.609e-01	0.9071	23.0	3.07%	1464.9	3.14%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-5.463e-01	0.9164	36.0	4.81%	2294.2	4.92%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-5.396e-01	0.9186	2.0	0.27%	122.3	0.26%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-5.381e-01	0.9186	5.0	0.67%	320.2	0.69%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	-5.349e-01	0.9186	59.0	7.88%	3753.9	8.05%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e0	-5.340e-01	0.9186	7.0	0.93%	451.2	0.97%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e0	-5.033e-01	0.9364	7.0	0.93%	459.7	0.99%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	-4.992e-01	0.9364	20.0	2.67%	1300.1	2.79%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-4.955e-01	0.9364	3.0	0.40%	197.0	0.42%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e0	-4.935e-01	0.9364	30.0	4.01%	1942.7	4.16%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-4.922e-01	0.9364	7.0	0.93%	462.6	0.99%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-4.718e-01	0.9462	5.0	0.67%	335.3	0.72%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-4.716e-01	0.9462	32.0	4.27%	2082.1	4.46%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-4.681e-01	0.9462	3.0	0.40%	201.5	0.43%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e0	-4.636e-01	0.9462	7.0	0.93%	470.0	1.01%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e0	-4.598e-01	0.9462	152.0	20.29%	9675.4	20.74%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-4.489e-01	0.9483	18.0	2.40%	1194.3	2.56%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e0	-4.436e-01	0.9496	2.0	0.27%	136.6	0.29%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-4.375e-01	0.9515	2.0	0.27%	137.7	0.30%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-4.319e-01	0.9530	5.0	0.67%	345.4	0.74%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e0	-4.100e-01	0.9702	32.0	4.27%	2120.3	4.54%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-3.848e-01	0.9910	5.0	0.67%	358.6	0.77%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e0	-3.778e-01	0.9939	48.0	6.41%	3173.3	6.80%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e0	-3.776e-01	0.9939	12.0	1.60%	833.6	1.79%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e0	-3.715e-01	0.9939	10.0	1.34%	702.1	1.50%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-3.694e-01	0.9939	7.0	0.93%	500.7	1.07%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	-3.632e-01	0.9939	28.0	3.74%	1892.2	4.06%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-3.606e-01	0.9939	2.0	0.27%	151.1	0.32%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e0	-3.586e-01	0.9939	22.0	2.94%	1503.9	3.22%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-3.570e-01	0.9939	22.0	2.94%	1504.4	3.22%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e0	-3.495e-01	0.9939	1.0	0.13%	76.6	0.16%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-3.473e-01	0.9939	4.0	0.53%	299.2	0.64%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e0	-3.371e-01	0.9956	4.0	0.53%	302.7	0.65%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-3.368e-01	0.9956	2.0	0.27%	156.6	0.34%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-3.244e-01	1.0000	29.0	3.87%	1985.4	4.26%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e0	-3.237e-01	1.0000	1.0	0.13%	80.4	0.17%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	-3.211e-01	1.0000	24.0	3.20%	1659.9	3.56%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	-3.019e-01	1.0000	2.0	0.27%	164.6	0.35%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-2.963e-01	1.0000	12.0	1.60%	873.1	1.87%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e0	-2.774e-01	1.0000	13.0	1.74%	952.2	2.04%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-2.773e-01	1.0000	6.0	0.80%	466.1	1.00%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e0	-2.746e-01	1.0000	3.0	0.40%	248.4	0.53%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-2.643e-01	1.0000	7.0	0.93%	543.3	1.16%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e0	-2.623e-01	1.0000	3.0	0.40%	252.4	0.54%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e0	-2.612e-01	1.0000	13.0	1.74%	962.3	2.06%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e0	-2.491e-01	1.0000	10.0	1.34%	762.2	1.63%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-2.448e-01	1.0000	19.0	2.54%	1382.6	2.96%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e0	-2.406e-01	1.0000	1.0	0.13%	96.2	0.21%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e0	-2.388e-01	1.0000	21.0	2.80%	1523.0	3.26%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-2.277e-01	1.0000	4.0	0.53%	341.2	0.73%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e0	-2.150e-01	1.0000	45.0	6.01%	3144.5	6.74%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-2.095e-01	1.0000	22.0	2.94%	1616.9	3.47%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-2.082e-01	1.0000	1.0	0.13%	104.8	0.22%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e0	-1.943e-01	1.0000	59.0	7.88%	4093.2	8.77%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	-1.942e-01	1.0000	29.0	3.87%	2106.0	4.51%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-1.892e-01	1.0000	59.0	7.88%	4101.9	8.79%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-1.871e-01	1.0000	8.0	1.07%	659.6	1.41%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-1.839e-01	1.0000	44.0	5.87%	3120.8	6.69%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-1.839e-01	1.0000	1.0	0.13%	111.4	0.24%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-1.839e-01	1.0000	3.0	0.40%	283.9	0.61%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-1.794e-01	1.0000	7.0	0.93%	591.9	1.27%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e0	-1.724e-01	1.0000	19.0	2.54%	1448.4	3.10%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-1.688e-01	1.0000	17.0	2.27%	1313.6	2.82%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-1.685e-01	1.0000	46.0	6.14%	3276.8	7.02%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-1.683e-01	1.0000	5.0	0.67%	448.6	0.96%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-1.649e-01	1.0000	34.0	4.54%	2479.5	5.31%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e0	-1.621e-01	1.0000	16.0	2.14%	1250.8	2.68%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	-1.592e-01	1.0000	55.0	7.34%	3888.7	8.33%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e0	-1.556e-01	1.0000	33.0	4.41%	2425.1	5.20%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e0	-1.550e-01	1.0000	8.0	1.07%	683.7	1.47%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	-1.550e-01	1.0000	66.0	8.81%	4621.7	9.91%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-1.462e-01	1.0000	64.0	8.54%	4507.7	9.66%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e0	-1.346e-01	1.0000	10.0	1.34%	849.7	1.82%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-1.341e-01	1.0000	2.0	0.27%	224.5	0.48%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-1.323e-01	1.0000	2.0	0.27%	226.0	0.48%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-1.288e-01	1.0000	89.0	11.88%	6187.6	13.26%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-1.181e-01	1.0000	8.0	1.07%	718.0	1.54%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e0	-1.070e-01	1.0000	21.0	2.80%	1674.1	3.59%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-1.045e-01	1.0000	61.0	8.14%	4404.5	9.44%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-1.040e-01	1.0000	1.0	0.13%	144.4	0.31%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e0	-1.002e-01	1.0000	128.0	17.09%	8811.8	18.89%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-9.982e-02	1.0000	6.0	0.80%	582.9	1.25%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-9.380e-02	1.0000	8.0	1.07%	745.9	1.60%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-8.664e-02	1.0000	38.0	5.07%	2897.1	6.21%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-8.018e-02	1.0000	2.0	0.27%	262.1	0.56%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-7.425e-02	1.0000	1.0	0.13%	164.3	0.35%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-7.343e-02	1.0000	5.0	0.67%	533.3	1.14%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-7.235e-02	1.0000	14.0	1.87%	1232.1	2.64%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-7.062e-02	1.0000	1.0	0.13%	167.5	0.36%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e0	-6.628e-02	1.0000	2.0	0.27%	276.6	0.59%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-6.336e-02	1.0000	53.0	7.08%	3994.8	8.56%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-5.997e-02	1.0000	5.0	0.67%	553.7	1.19%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-5.956e-02	1.0000	24.0	3.20%	1991.3	4.27%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-5.695e-02	1.0000	10.0	1.34%	961.1	2.06%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	-5.676e-02	1.0000	52.0	6.94%	3952.1	8.47%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-5.511e-02	1.0000	4.0	0.53%	475.8	1.02%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e0	-5.276e-02	1.0000	14.0	1.87%	1277.2	2.74%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e0	-4.498e-02	1.0000	12.0	1.60%	1146.1	2.46%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e0	-4.459e-02	1.0000	2.0	0.27%	305.9	0.66%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e0	-4.388e-02	1.0000	32.0	4.27%	2617.2	5.61%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-4.269e-02	1.0000	134.0	17.89%	9491.4	20.34%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-3.909e-02	1.0000	62.0	8.28%	4723.4	10.12%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e0	-3.765e-02	1.0000	12.0	1.60%	1169.1	2.51%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-3.693e-02	1.0000	3.0	0.40%	418.1	0.90%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e0	-2.934e-02	1.0000	8.0	1.07%	878.7	1.88%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-2.646e-02	1.0000	146.0	19.49%	10426.3	22.35%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	-2.631e-02	1.0000	63.0	8.41%	4885.0	10.47%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-1.811e-02	1.0000	17.0	2.27%	1654.8	3.55%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-1.594e-02	1.0000	9.0	1.20%	1028.5	2.20%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-1.429e-02	1.0000	2.0	0.27%	387.2	0.83%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e0	-1.393e-02	1.0000	15.0	2.00%	1532.3	3.28%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e0	-1.348e-02	1.0000	5.0	0.67%	693.8	1.49%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e0	-1.316e-02	1.0000	27.0	3.60%	2459.9	5.27%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-1.263e-02	1.0000	7.0	0.93%	880.8	1.89%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-1.167e-02	1.0000	12.0	1.60%	1312.5	2.81%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-1.083e-02	1.0000	50.0	6.68%	4162.3	8.92%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e0	-8.633e-03	1.0000	42.0	5.61%	3630.6	7.78%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-6.248e-03	1.0000	5.0	0.67%	761.2	1.63%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e0	-5.820e-03	1.0000	10.0	1.34%	1222.0	2.62%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-3.968e-03	1.0000	14.0	1.87%	1602.8	3.44%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	0.000e+00	1.0000	0.0	0.00%	35.2	0.08%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	0.000e+00	1.0000	0.0	0.00%	88.6	0.19%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	0.000e+00	1.0000	0.0	0.00%	16.0	0.03%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	0.000e+00	1.0000	0.0	0.00%	81.5	0.17%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	0.000e+00	1.0000	0.0	0.00%	17.7	0.04%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	0.000e+00	1.0000	0.0	0.00%	148.6	0.32%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e0	0.000e+00	1.0000	0.0	0.00%	15.0	0.03%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	0.000e+00	1.0000	0.0	0.00%	11.8	0.03%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	0.000e+00	1.0000	0.0	0.00%	14.6	0.03%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	0.000e+00	1.0000	0.0	0.00%	129.0	0.28%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	0.000e+00	1.0000	0.0	0.00%	43.8	0.09%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	0.000e+00	1.0000	0.0	0.00%	167.0	0.36%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	0.000e+00	1.0000	0.0	0.00%	15.8	0.03%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	0.000e+00	1.0000	0.0	0.00%	2.3	0.00%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	0.000e+00	1.0000	0.0	0.00%	10.9	0.02%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	0.000e+00	1.0000	0.0	0.00%	13.2	0.03%