Information for 5-ACTATGCATG (Motif 3)

C T G A G T A C G A C T G C T A C G A T C A T G G T A C C G T A C G A T A C T G
Reverse Opposite:
G T A C G C T A C G A T C A T G G T A C C G T A C G A T C T G A C A T G G A C T
p-value:1e-91
log p-value:-2.115e+02
Information Content per bp:1.711
Number of Target Sequences with motif146.0
Percentage of Target Sequences with motif19.11%
Number of Background Sequences with motif5.7
Percentage of Background Sequences with motif2.33%
Average Position of motif in Targets51.4 +/- 27.4bp
Average Position of motif in Background64.5 +/- 35.3bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.10
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:1
Score:0.74
Offset:-1
Orientation:reverse strand
Alignment:-ACTATGCATG
GAATATTCAT-
 A C G T C T G A G T A C G A C T G C T A C G A T C A T G G T A C C G T A C G A T A C T G
T C A G G T C A C G T A A G C T C G T A G A C T C A G T A T G C T C G A C G A T A C G T

POU2F2/MA0507.1/Jaspar

Match Rank:2
Score:0.73
Offset:-2
Orientation:forward strand
Alignment:--ACTATGCATG-
TTCATTTGCATAT
 A C G T A C G T C T G A G T A C G A C T G C T A C G A T C A T G G T A C C G T A C G A T A C T G A C G T
G A C T C A G T G T A C G C T A A C G T G C A T A C G T C T A G A G T C G T C A A G C T C T G A G C A T

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:3
Score:0.73
Offset:-1
Orientation:reverse strand
Alignment:-ACTATGCATG
GHATATKCAT-
 A C G T C T G A G T A C G A C T G C T A C G A T C A T G G T A C C G T A C G A T A C T G
C T A G G T A C C G T A G A C T C T G A C G A T C A T G G A T C C G T A C G A T A C G T

PH0148.1_Pou3f3/Jaspar

Match Rank:4
Score:0.72
Offset:-3
Orientation:reverse strand
Alignment:---ACTATGCATG----
TNNATTATGCATANNTT
 A C G T A C G T A C G T C T G A G T A C G A C T G C T A C G A T C A T G G T A C C G T A C G A T A C T G A C G T A C G T A C G T A C G T
G C A T G C A T G A C T G T C A C G A T C G A T C G T A A G C T C A T G G T A C C T G A C G A T C T G A G C A T G A C T C G A T C G A T

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:5
Score:0.70
Offset:-2
Orientation:reverse strand
Alignment:--ACTATGCATG
BTVATTWGCATA
 A C G T A C G T C T G A G T A C G A C T G C T A C G A T C A T G G T A C C G T A C G A T A C T G
A G T C C A G T T G C A G T C A A C G T A G C T C G A T T C A G G T A C C G T A A C G T C T G A

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:6
Score:0.69
Offset:1
Orientation:forward strand
Alignment:ACTATGCATG-
-ATTTGCATAA
 C T G A G T A C G A C T G C T A C G A T C A T G G T A C C G T A C G A T A C T G A C G T
A C G T C G T A A C G T A G C T C G A T C T A G G T A C C G T A A G C T C G T A G C T A

Pou2f3/MA0627.1/Jaspar

Match Rank:7
Score:0.68
Offset:-3
Orientation:reverse strand
Alignment:---ACTATGCATG---
TNTAATTTGCATACNA
 A C G T A C G T A C G T C T G A G T A C G A C T G C T A C G A T C A T G G T A C C G T A C G A T A C T G A C G T A C G T A C G T
A C G T G A T C C A G T T G C A G C T A C G A T G C A T C G A T C T A G G T A C C T G A C G A T C T G A G T A C C G T A T C G A

PH0145.1_Pou2f3/Jaspar

Match Rank:8
Score:0.68
Offset:-3
Orientation:reverse strand
Alignment:---ACTATGCATG---
TNTAATTTGCATACNA
 A C G T A C G T A C G T C T G A G T A C G A C T G C T A C G A T C A T G G T A C C G T A C G A T A C T G A C G T A C G T A C G T
A C G T G A T C C A G T T G C A G C T A C G A T G C A T C G A T C T A G G T A C C T G A C G A T C T G A G T A C C G T A T C G A

PH0144.1_Pou2f2/Jaspar

Match Rank:9
Score:0.67
Offset:-3
Orientation:reverse strand
Alignment:---ACTATGCATG---
TNTAATTTGCATANNN
 A C G T A C G T A C G T C T G A G T A C G A C T G C T A C G A T C A T G G T A C C G T A C G A T A C T G A C G T A C G T A C G T
A C G T G A T C C A G T G T C A G C T A C G A T G C A T C G A T T C A G G T A C C T G A C G A T C G T A G T A C C G T A T C G A

Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer

Match Rank:10
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:ACTATGCATG-
-ATTTGCATAT
 C T G A G T A C G A C T G C T A C G A T C A T G G T A C C G T A C G A T A C T G A C G T
A C G T G C T A C G A T G A C T A C G T C T A G G A T C G T C A C G A T C G T A C A G T