Information for 19-CGTTTATAAA (Motif 18)

G A T C A C T G C G A T C G A T G C A T G C T A C G A T C T G A C G T A C G T A
Reverse Opposite:
G A C T G C A T G A C T G C T A C G A T C G T A G C T A C G T A T G A C C T A G
p-value:1e-33
log p-value:-7.756e+01
Information Content per bp:1.457
Number of Target Sequences with motif75.0
Percentage of Target Sequences with motif9.82%
Number of Background Sequences with motif4.3
Percentage of Background Sequences with motif1.76%
Average Position of motif in Targets43.1 +/- 26.1bp
Average Position of motif in Background58.3 +/- 24.1bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0080.1_Tbp_1/Jaspar

Match Rank:1
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--CGTTTATAAA----
TCTTTATATATAAATA
 A C G T A C G T G A T C A C T G C G A T C G A T G C A T G C T A C G A T C T G A C G T A C G T A A C G T A C G T A C G T A C G T
A G C T A G T C G C A T C G A T G C A T C G T A G C A T C G T A C G A T C G T A C G A T C G T A G C T A G T C A C A G T T C G A

POL012.1_TATA-Box/Jaspar

Match Rank:2
Score:0.69
Offset:3
Orientation:forward strand
Alignment:CGTTTATAAA--------
---GTATAAAAGGCGGGG
 G A T C A C T G C G A T C G A T G C A T G C T A C G A T C T G A C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

TBP/MA0108.2/Jaspar

Match Rank:3
Score:0.69
Offset:3
Orientation:forward strand
Alignment:CGTTTATAAA--------
---GTATAAAAGGCGGGG
 G A T C A C T G C G A T C G A T G C A T G C T A C G A T C T G A C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:4
Score:0.68
Offset:1
Orientation:forward strand
Alignment:CGTTTATAAA---
-NGYCATAAAWCH
 G A T C A C T G C G A T C G A T G C A T G C T A C G A T C T G A C G T A C G T A A C G T A C G T A C G T
A C G T T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A

FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer

Match Rank:5
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--CGTTTATAAA
CBTGTTTAYAWW
 A C G T A C G T G A T C A C T G C G A T C G A T G C A T G C T A C G A T C T G A C G T A C G T A
A T G C A C G T A C G T C T A G A C G T A C G T A C G T C G T A A G T C G C T A C G A T G C A T

Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer

Match Rank:6
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-CGTTTATAAA-
NTGTTTAYATWW
 A C G T G A T C A C T G C G A T C G A T G C A T G C T A C G A T C T G A C G T A C G T A A C G T
C A G T A C G T C T A G A C G T A C G T A C G T C G T A A G C T T G C A G A C T C G T A C G T A

PB0187.1_Tcf7_2/Jaspar

Match Rank:7
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-CGTTTATAAA----
NNNTTTNTAATACNG
 A C G T G A T C A C T G C G A T C G A T G C A T G C T A C G A T C T G A C G T A C G T A A C G T A C G T A C G T A C G T
C G A T C A G T C T A G C A G T C A G T C G A T T G C A A G C T G T C A C G T A C G A T C G T A G T A C T C A G C A T G

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:8
Score:0.65
Offset:0
Orientation:forward strand
Alignment:CGTTTATAAA
CGGTTTCAAA
 G A T C A C T G C G A T C G A T G C A T G C T A C G A T C T G A C G T A C G T A
T A G C T C A G C A T G G C A T A G C T C G A T A T G C C G T A C G T A G T C A

Foxq1/MA0040.1/Jaspar

Match Rank:9
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---CGTTTATAAA
TATTGTTTATT--
 A C G T A C G T A C G T G A T C A C T G C G A T C G A T G C A T G C T A C G A T C T G A C G T A C G T A
G A C T C T G A G C A T C G A T A C T G A C G T A C G T A C G T C T G A A C G T C G A T A C G T A C G T

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:10
Score:0.63
Offset:1
Orientation:forward strand
Alignment:CGTTTATAAA-
-NCYAATAAAA
 G A T C A C T G C G A T C G A T G C A T G C T A C G A T C T G A C G T A C G T A A C G T
A C G T C G A T T A G C G A C T G T C A C G T A A C G T C G T A C G T A C G T A G C T A