Information for 5-AAWYAGKGTVWAW (Motif 12)

C G T A C G T A C G A T A G T C C G T A C T A G C A G T C A T G C A G T T G A C C G T A C G T A C G T A
Reverse Opposite:
C G A T G C A T C G A T A C T G G T C A G T A C G T C A G A T C C G A T T C A G C G T A G C A T G C A T
p-value:1e-58
log p-value:-1.348e+02
Information Content per bp:1.586
Number of Target Sequences with motif63.0
Percentage of Target Sequences with motif8.25%
Number of Background Sequences with motif2.0
Percentage of Background Sequences with motif0.81%
Average Position of motif in Targets48.0 +/- 27.9bp
Average Position of motif in Background18.4 +/- 5.5bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RORA(var.2)/MA0072.1/Jaspar

Match Rank:1
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--AAWYAGKGTVWAW
TATAAGTAGGTCAA-
 A C G T A C G T C G T A C G T A C G A T A G T C C G T A C T A G C A G T C A T G C A G T T G A C C G T A C G T A C G T A
C G A T C G T A C G A T G T C A C G T A A T C G A C G T C T G A A C T G A C T G A C G T A G T C C G T A T C G A A C G T

RORA/MA0071.1/Jaspar

Match Rank:2
Score:0.51
Offset:1
Orientation:forward strand
Alignment:AAWYAGKGTVWAW
-ATCAAGGTCA--
 C G T A C G T A C G A T A G T C C G T A C T A G C A G T C A T G C A G T T G A C C G T A C G T A C G T A
A C G T C G T A G C A T T G A C C G T A C T G A A C T G A C T G A C G T A G T C C G T A A C G T A C G T

IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer

Match Rank:3
Score:0.51
Offset:-1
Orientation:reverse strand
Alignment:-AAWYAGKGTVWAW-
BAGTCATANTGAAAG
 A C G T C G T A C G T A C G A T A G T C C G T A C T A G C A G T C A T G C A G T T G A C C G T A C G T A C G T A A C G T
A C T G C G T A A T C G C G A T T G A C C G T A C G A T G C T A G T C A C G A T T C A G C T G A C T G A C T G A T A C G

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:4
Score:0.50
Offset:3
Orientation:forward strand
Alignment:AAWYAGKGTVWAW
---CGGTTTCAAA
 C G T A C G T A C G A T A G T C C G T A C T A G C A G T C A T G C A G T T G A C C G T A C G T A C G T A
A C G T A C G T A C G T T A G C T C A G C A T G G C A T A G C T C G A T A T G C C G T A C G T A G T C A

ESRRB/MA0141.3/Jaspar

Match Rank:5
Score:0.50
Offset:2
Orientation:forward strand
Alignment:AAWYAGKGTVWAW
--TCAAGGTCATA
 C G T A C G T A C G A T A G T C C G T A C T A G C A G T C A T G C A G T T G A C C G T A C G T A C G T A
A C G T A C G T G A C T T A G C G C T A T C G A T C A G A T C G A G C T G A T C C T G A G C A T G C T A

bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer

Match Rank:6
Score:0.50
Offset:-2
Orientation:reverse strand
Alignment:--AAWYAGKGTVWAW---
WNAGTCADAVTGAAACTN
 A C G T A C G T C G T A C G T A C G A T A G T C C G T A C T A G C A G T C A T G C A G T T G A C C G T A C G T A C G T A A C G T A C G T A C G T
G C A T T A C G C G T A A T C G G C A T T A G C G C T A C G T A G C T A T G C A C G A T T C A G C T G A T C G A T C G A T A G C G A C T T C A G

PH0092.1_Lhx2/Jaspar

Match Rank:7
Score:0.49
Offset:-7
Orientation:reverse strand
Alignment:-------AAWYAGKGTVWAW
NNNNNCTAATTAGTTTA---
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G T A C G A T A G T C C G T A C T A G C A G T C A T G C A G T T G A C C G T A C G T A C G T A
A T C G C A G T A C G T G T A C T C G A G A T C G A C T G T C A C T G A A G C T A C G T C T G A C T A G A G C T C A G T A C G T G C T A A C G T A C G T A C G T

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:8
Score:0.49
Offset:1
Orientation:forward strand
Alignment:AAWYAGKGTVWAW
-AAYTAGGTCA--
 C G T A C G T A C G A T A G T C C G T A C T A G C A G T C A T G C A G T T G A C C G T A C G T A C G T A
A C G T G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A A C G T A C G T

PH0096.1_Lhx6_1/Jaspar

Match Rank:9
Score:0.48
Offset:-7
Orientation:forward strand
Alignment:-------AAWYAGKGTVWAW
GAGCGTTAATTAATGTA---
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G T A C G A T A G T C C G T A C T A G C A G T C A T G C A G T T G A C C G T A C G T A C G T A
T A C G C G T A T C A G G T A C T C A G G A C T G A C T T C G A C T G A A G C T A G C T C T G A C T G A A C G T C A T G A G C T G C T A A C G T A C G T A C G T

FOXB1/MA0845.1/Jaspar

Match Rank:10
Score:0.48
Offset:4
Orientation:forward strand
Alignment:AAWYAGKGTVWAW--
----TATGTAAATAT
 C G T A C G T A C G A T A G T C C G T A C T A G C A G T C A T G C A G T T G A C C G T A C G T A C G T A A C G T A C G T
A C G T A C G T A C G T A C G T G C A T C T G A C G A T C T A G G A C T T G C A G C T A C G T A A G C T C T G A G C A T