Information for 13-TCATGCATGA (Motif 21)

A C G T A G T C C G T A A C G T A C T G A T G C C G T A A G C T A C T G C G T A
Reverse Opposite:
A C G T A G T C C T G A C G A T A T C G G T A C C G T A A C G T A C T G C G T A
p-value:1e-8
log p-value:-1.883e+01
Information Content per bp:1.911
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.96%
Number of Background Sequences with motif21.3
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets50.7 +/- 23.3bp
Average Position of motif in Background50.8 +/- 33.1bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pax6/MA0069.1/Jaspar

Match Rank:1
Score:0.73
Offset:-1
Orientation:forward strand
Alignment:-TCATGCATGA---
TTCACGCATGAGTT
 A C G T A C G T A G T C C G T A A C G T A C T G A T G C C G T A A G C T A C T G C G T A A C G T A C G T A C G T
A C G T G A C T G A T C G T C A G A T C C A T G A T G C C G T A A G C T A T C G C T G A T A C G A G C T C A G T

PAX1/MA0779.1/Jaspar

Match Rank:2
Score:0.72
Offset:-2
Orientation:forward strand
Alignment:--TCATGCATGA-----
CGTCACGCATGACTGCA
 A C G T A C G T A C G T A G T C C G T A A C G T A C T G A T G C C G T A A G C T A C T G C G T A A C G T A C G T A C G T A C G T A C G T
A T G C C A T G G C A T G A T C T G C A G A T C C A T G A T G C G C T A G A C T A T C G T C G A T A G C G A C T C A T G T G A C G T C A

PAX9/MA0781.1/Jaspar

Match Rank:3
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--TCATGCATGA-----
CGTCACGCATGACTGCA
 A C G T A C G T A C G T A G T C C G T A A C G T A C T G A T G C C G T A A G C T A C T G C G T A A C G T A C G T A C G T A C G T A C G T
A T G C A C T G G C A T A G T C T G C A A G T C A C T G A T G C G C T A G A C T A T C G C T G A T A G C G A C T C A T G T G A C G T C A

PB0178.1_Sox8_2/Jaspar

Match Rank:4
Score:0.68
Offset:0
Orientation:forward strand
Alignment:TCATGCATGA----
ACATTCATGACACG
 A C G T A G T C C G T A A C G T A C T G A T G C C G T A A G C T A C T G C G T A A C G T A C G T A C G T A C G T
C G T A G A T C G C T A A C G T C G A T G A T C T C G A A C G T C T A G G C T A G T A C G T C A A T G C T A C G

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:5
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-TCATGCATGA----
GTCATGCHTGRCTGS
 A C G T A C G T A G T C C G T A A C G T A C T G A T G C C G T A A G C T A C T G C G T A A C G T A C G T A C G T A C G T
A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C

MAFG::NFE2L1/MA0089.1/Jaspar

Match Rank:6
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-TCATGCATGA
GTCATN-----
 A C G T A C G T A G T C C G T A A C G T A C T G A T G C C G T A A G C T A C T G C G T A
T C A G A C G T G A T C C G T A A G C T A T C G A C G T A C G T A C G T A C G T A C G T

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:7
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--TCATGCATGA----
NGTCACGCTTGGCTGC
 A C G T A C G T A C G T A G T C C G T A A C G T A C T G A T G C C G T A A G C T A C T G C G T A A C G T A C G T A C G T A C G T
C T A G A C T G A G C T A G T C G T C A G A T C T C A G A T G C G C A T G A C T A T C G T C A G T A G C G A C T C T A G T G A C

OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:8
Score:0.62
Offset:-5
Orientation:forward strand
Alignment:-----TCATGCATGA
ATGAATWATTCATGA
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C G T A C T G A T G C C G T A A G C T A C T G C G T A
G T C A A C G T C T A G G T C A C G T A G C A T C G T A C G T A G C A T C A G T A G T C C G T A C A G T C T A G C T G A

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:9
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-TCATGCATGA-
ATGATKGATGRC
 A C G T A C G T A G T C C G T A A C G T A C T G A T G C C G T A A G C T A C T G C G T A A C G T
C T G A C G A T A T C G C G T A C G A T C A G T C T A G C G T A C G A T A C T G C T G A A T G C

Pax2/MA0067.1/Jaspar

Match Rank:10
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--TCATGCATGA
AGTCACGC----
 A C G T A C G T A C G T A G T C C G T A A C G T A C T G A T G C C G T A A G C T A C T G C G T A
G C T A C T A G G C A T A G T C C T G A G A T C C A T G A T C G A C G T A C G T A C G T A C G T