Information for 3-TCCCTGACCC (Motif 8)

A C G T A G T C A G T C A G T C A G C T A T C G C T G A A G T C A G T C A G T C
Reverse Opposite:
C T A G A C T G A C T G G A C T A T G C C T G A A C T G T C A G A C T G C G T A
p-value:1e-10
log p-value:-2.307e+01
Information Content per bp:1.855
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif6.70%
Number of Background Sequences with motif264.7
Percentage of Background Sequences with motif0.55%
Average Position of motif in Targets45.6 +/- 25.4bp
Average Position of motif in Background49.8 +/- 27.0bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0153.1_Nr2f2_2/Jaspar

Match Rank:1
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:TCCCTGACCC------
NNNNTGACCCGGCGCG
 A C G T A G T C A G T C A G T C A G C T A T C G C T G A A G T C A G T C A G T C A C G T A C G T A C G T A C G T A C G T A C G T
C G A T T C G A T A G C A T C G A G C T T C A G G T C A G T A C G T A C A G T C T A C G T C A G G T A C A C T G G T A C A C T G

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:2
Score:0.69
Offset:4
Orientation:reverse strand
Alignment:TCCCTGACCC
----TGACCT
 A C G T A G T C A G T C A G T C A G C T A T C G C T G A A G T C A G T C A G T C
A C G T A C G T A C G T A C G T A C G T C A T G G C T A G T A C G T A C G A C T

PB0157.1_Rara_2/Jaspar

Match Rank:3
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:TCCCTGACCC------
NNCNTGACCCCGCTCT
 A C G T A G T C A G T C A G T C A G C T A T C G C T G A A G T C A G T C A G T C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T T G C A T G A C C A G T G A C T T C A G C G T A G T A C G T A C A T G C T A G C T C A G G T A C C A G T G T A C C A G T

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:4
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--TCCCTGACCC
TGACCTTGACCT
 A C G T A C G T A C G T A G T C A G T C A G T C A G C T A T C G C T G A A G T C A G T C A G T C
G A C T T A C G G C T A T G A C A G T C A G C T A C G T C T A G T C G A G T A C G T A C A G C T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:5
Score:0.67
Offset:4
Orientation:reverse strand
Alignment:TCCCTGACCC--
----TGACCYCT
 A C G T A G T C A G T C A G T C A G C T A T C G C T G A A G T C A G T C A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A G C T T C A G T G C A G T A C T G A C A G C T A G T C A G C T

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:6
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--TCCCTGACCC
TGACCTTGACCT
 A C G T A C G T A C G T A G T C A G T C A G T C A G C T A T C G C T G A A G T C A G T C A G T C
G A C T T C A G T G C A A G T C A G T C G A C T A C G T T A C G C G T A G T A C G A T C G A C T

PB0057.1_Rxra_1/Jaspar

Match Rank:7
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-TCCCTGACCC------
TGTCGTGACCCCTTAAT
 A C G T A C G T A G T C A G T C A G T C A G C T A T C G C T G A A G T C A G T C A G T C A C G T A C G T A C G T A C G T A C G T A C G T
C A G T A T C G G A C T A G T C C A T G A G C T T C A G G T C A G T A C G T A C A G T C A G T C C G A T G A C T T C G A G T C A A G C T

FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer

Match Rank:8
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----TCCCTGACCC
NAGGTCANTGACCT
 A C G T A C G T A C G T A C G T A C G T A G T C A G T C A G T C A G C T A T C G C T G A A G T C A G T C A G T C
T C A G T C G A C T A G C A T G A C G T A T G C T C G A G A C T A G C T T A C G T G C A G T A C G T A C A G C T

Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer

Match Rank:9
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:TCCCTGACCC
-CCCCCCCC-
 A C G T A G T C A G T C A G T C A G C T A T C G C T G A A G T C A G T C A G T C
A C G T A G T C A G T C A T G C A G T C A G T C G A T C A G T C A G T C A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:10
Score:0.62
Offset:4
Orientation:reverse strand
Alignment:TCCCTGACCC--
----TGACCTYA
 A C G T A G T C A G T C A G T C A G C T A T C G C T G A A G T C A G T C A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A