Information for 19-GCCAATCACG (Motif 20)

A T C G A G T C A G T C C G T A G T C A C G A T A G T C C T G A A G T C C A T G
Reverse Opposite:
G T A C T C A G A G C T A C T G C G T A A C G T A C G T A C T G A C T G A T G C
p-value:1e-8
log p-value:-1.949e+01
Information Content per bp:1.860
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif1.63%
Number of Background Sequences with motif78.1
Percentage of Background Sequences with motif0.18%
Average Position of motif in Targets48.2 +/- 24.9bp
Average Position of motif in Background57.7 +/- 32.5bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL004.1_CCAAT-box/Jaspar

Match Rank:1
Score:0.83
Offset:-4
Orientation:forward strand
Alignment:----GCCAATCACG
ACTAGCCAATCA--
 A C G T A C G T A C G T A C G T A T C G A G T C A G T C C G T A G T C A C G A T A G T C C T G A A G T C C A T G
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A A C G T A C G T

NFY(CCAAT)/Promoter/Homer

Match Rank:2
Score:0.79
Offset:-1
Orientation:forward strand
Alignment:-GCCAATCACG
AGCCAATCGG-
 A C G T A T C G A G T C A G T C C G T A G T C A C G A T A G T C C T G A A G T C C A T G
T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G A C G T

NFYB/MA0502.1/Jaspar

Match Rank:3
Score:0.79
Offset:-6
Orientation:forward strand
Alignment:------GCCAATCACG
AAATGGACCAATCAG-
 A C G T A C G T A C G T A C G T A C G T A C G T A T C G A G T C A G T C C G T A G T C A C G A T A G T C C T G A A G T C C A T G
T C G A G T C A G T C A A G C T A T C G T C A G C T G A A G T C A G T C C G T A C T G A A C G T T A G C T C G A T A C G A C G T

Dux/MA0611.1/Jaspar

Match Rank:4
Score:0.76
Offset:1
Orientation:forward strand
Alignment:GCCAATCACG
-CCAATCAA-
 A T C G A G T C A G T C C G T A G T C A C G A T A G T C C T G A A G T C C A T G
A C G T A T G C A G T C C G T A C G T A A C G T A G T C C G T A C G T A A C G T

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:5
Score:0.75
Offset:-3
Orientation:forward strand
Alignment:---GCCAATCACG
SCTGTCAVTCAV-
 A C G T A C G T A C G T A T C G A G T C A G T C C G T A G T C A C G A T A G T C C T G A A G T C C A T G
T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A A C G T

NFIC/MA0161.1/Jaspar

Match Rank:6
Score:0.73
Offset:-1
Orientation:reverse strand
Alignment:-GCCAATCACG
TGCCAA-----
 A C G T A T C G A G T C A G T C C G T A G T C A C G A T A G T C C T G A A G T C C A T G
G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T A C G T A C G T

Gfi1/MA0038.1/Jaspar

Match Rank:7
Score:0.71
Offset:1
Orientation:forward strand
Alignment:GCCAATCACG-
-CAAATCACTG
 A T C G A G T C A G T C C G T A G T C A C G A T A G T C C T G A A G T C C A T G A C G T
A C G T A G T C T G C A C G T A C G T A C A G T G T A C G C T A T A G C G C A T T A C G

NFIX/MA0671.1/Jaspar

Match Rank:8
Score:0.71
Offset:-3
Orientation:forward strand
Alignment:---GCCAATCACG
CGTGCCAAG----
 A C G T A C G T A C G T A T C G A G T C A G T C C G T A G T C A C G A T A G T C C T G A A G T C C A T G
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T A C G T

NFYA/MA0060.2/Jaspar

Match Rank:9
Score:0.70
Offset:-3
Orientation:reverse strand
Alignment:---GCCAATCACG-----
TGGACCAATCAGCACTCT
 A C G T A C G T A C G T A T C G A G T C A G T C C G T A G T C A C G A T A G T C C T G A A G T C C A T G A C G T A C G T A C G T A C G T A C G T
A G C T A T C G T C A G C T G A A T G C A G T C C G T A T C G A G A C T T A G C T C G A T C A G T G A C C T G A A T G C A C G T G T A C C G A T

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:10
Score:0.70
Offset:-3
Orientation:forward strand
Alignment:---GCCAATCACG
NCTGTCAATCAN-
 A C G T A C G T A C G T A T C G A G T C A G T C C G T A G T C A C G A T A G T C C T G A A G T C C A T G
T A G C T A G C G A C T C T A G A G C T A G T C G T C A T G C A A C G T A T G C G C T A T G C A A C G T