Information for 13-TAAATCAACA (Motif 31)

A C G T C G T A C G T A C G T A A C G T A G T C C G T A C G T A A G T C C T G A
Reverse Opposite:
A G C T A C T G A C G T A C G T A C T G C G T A A C G T C G A T A C G T C G T A
p-value:1e-8
log p-value:-2.045e+01
Information Content per bp:1.939
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif1.03%
Number of Background Sequences with motif13.3
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets29.0 +/- 18.1bp
Average Position of motif in Background49.2 +/- 26.5bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

FOXC2/MA0846.1/Jaspar

Match Rank:1
Score:0.72
Offset:0
Orientation:forward strand
Alignment:TAAATCAACA--
TAAGTAAACAAA
 A C G T C G T A C G T A C G T A A C G T A G T C C G T A C G T A A G T C C T G A A C G T A C G T
G C A T C T G A G C T A T C A G G A C T G T C A G T C A C T G A A G T C C T G A G C T A G C T A

Hoxc9/MA0485.1/Jaspar

Match Rank:2
Score:0.71
Offset:-5
Orientation:forward strand
Alignment:-----TAAATCAACA
GGCCATAAATCAC--
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G T A C G T A A C G T A G T C C G T A C G T A A G T C C T G A
C T A G T A C G G A T C G T A C C T G A A G C T T G C A C G T A G T C A C G A T G A T C G C T A A G T C A C G T A C G T

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:3
Score:0.71
Offset:-5
Orientation:forward strand
Alignment:-----TAAATCAACA
GGCCATAAATCA---
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G T A C G T A A C G T A G T C C G T A C G T A A G T C C T G A
C T A G T A C G G A T C G T A C C T G A A G C T T G C A G C T A C G T A G C A T G A T C G C T A A C G T A C G T A C G T

FOXH1/MA0479.1/Jaspar

Match Rank:4
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-TAAATCAACA
TCCAATCCACA
 A C G T A C G T C G T A C G T A C G T A A C G T A G T C C G T A C G T A A G T C C T G A
A G C T A G T C T A G C C G T A C G T A A C G T G T A C G T A C C G T A A G T C C G T A

Hoxa9/MA0594.1/Jaspar

Match Rank:5
Score:0.71
Offset:-4
Orientation:forward strand
Alignment:----TAAATCAACA
GCCATAAATCA---
 A C G T A C G T A C G T A C G T A C G T C G T A C G T A C G T A A C G T A G T C C G T A C G T A A G T C C T G A
T A C G G A T C G T A C T C G A A C G T T G C A G C T A G T C A C G A T G A T C G C T A A C G T A C G T A C G T

MF0005.1_Forkhead_class/Jaspar

Match Rank:6
Score:0.70
Offset:1
Orientation:reverse strand
Alignment:TAAATCAACA
-AAATAAACA
 A C G T C G T A C G T A C G T A A C G T A G T C C G T A C G T A A G T C C T G A
A C G T T C G A G T C A T C G A G A C T G T C A C T G A T C G A G A T C C G T A

Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:TAAATCAACA--
SSAATCCACANN
 A C G T C G T A C G T A C G T A A C G T A G T C C G T A C G T A A G T C C T G A A C G T A C G T
A T G C T A G C C T G A C G T A A C G T G T A C G T A C C T G A A G T C C G T A C T G A G T A C

FOXC1/MA0032.2/Jaspar

Match Rank:8
Score:0.69
Offset:0
Orientation:forward strand
Alignment:TAAATCAACA-
TATGTAAATAT
 A C G T C G T A C G T A C G T A A C G T A G T C C G T A C G T A A G T C C T G A A C G T
G C A T C T G A C G A T T C A G G C A T G T C A G T C A C T G A A G C T C T G A G C A T

Foxd3/MA0041.1/Jaspar

Match Rank:9
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:TAAATCAACA---
-AAACAAACATTC
 A C G T C G T A C G T A C G T A A C G T A G T C C G T A C G T A A G T C C T G A A C G T A C G T A C G T
A C G T C T G A T G C A C T G A G A T C G T C A C G T A C G T A G A T C C T G A C G A T C G A T G A T C

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:10
Score:0.69
Offset:-5
Orientation:forward strand
Alignment:-----TAAATCAACA
GGCCATAAATCA---
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G T A C G T A A C G T A G T C C G T A C G T A A G T C C T G A
C T A G T A C G A G T C G T A C T C G A A C G T G T C A G C T A G C T A C G A T A G T C G C T A A C G T A C G T A C G T