Information for 4-AGGTCAGCAATGA (Motif 6)

C G T A A C T G A T C G C G A T A G T C C G T A A T C G A T G C C G T A C G T A C G A T A T C G C T G A
Reverse Opposite:
A G C T A T G C C G T A A C G T A C G T A T C G A T G C C G A T A C T G C G T A A T G C G T A C A C G T
p-value:1e-12
log p-value:-2.931e+01
Information Content per bp:1.859
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.29%
Number of Background Sequences with motif11.5
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets37.2 +/- 20.6bp
Average Position of motif in Background46.8 +/- 26.2bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:1
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--AGGTCAGCAATGA
TRAGGTCA-------
 A C G T A C G T C G T A A C T G A T C G C G A T A G T C C G T A A T C G A T G C C G T A C G T A C G A T A T C G C T G A
G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NR4A2/MA0160.1/Jaspar

Match Rank:2
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-AGGTCAGCAATGA
AAGGTCAC------
 A C G T C G T A A C T G A T C G C G A T A G T C C G T A A T C G A T G C C G T A C G T A C G A T A T C G C T G A
C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C A C G T A C G T A C G T A C G T A C G T A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:3
Score:0.67
Offset:0
Orientation:forward strand
Alignment:AGGTCAGCAATGA
AGGTCA-------
 C G T A A C T G A T C G C G A T A G T C C G T A A T C G A T G C C G T A C G T A C G A T A T C G C T G A
C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

RORA/MA0071.1/Jaspar

Match Rank:4
Score:0.67
Offset:-4
Orientation:forward strand
Alignment:----AGGTCAGCAATGA
ATCAAGGTCA-------
 A C G T A C G T A C G T A C G T C G T A A C T G A T C G C G A T A G T C C G T A A T C G A T G C C G T A C G T A C G A T A T C G C T G A
C G T A G C A T T G A C C G T A C T G A A C T G A C T G A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:5
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--AGGTCAGCAATGA
AGRGGTCA-------
 A C G T A C G T C G T A A C T G A T C G C G A T A G T C C G T A A T C G A T G C C G T A C G T A C G A T A T C G C T G A
T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:6
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---AGGTCAGCAATGA
TCAAGGTCAN------
 A C G T A C G T A C G T C G T A A C T G A T C G C G A T A G T C C G T A A T C G A T G C C G T A C G T A C G A T A T C G C T G A
A G C T T A G C C T G A T C G A A T C G C A T G C A G T A T G C T C G A G T A C A C G T A C G T A C G T A C G T A C G T A C G T

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:7
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---AGGTCAGCAATGA
CAAAGGTCAG------
 A C G T A C G T A C G T C G T A A C T G A T C G C G A T A G T C C G T A A T C G A T G C C G T A C G T A C G A T A T C G C T G A
A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G A C G T A C G T A C G T A C G T A C G T A C G T

PB0053.1_Rara_1/Jaspar

Match Rank:8
Score:0.63
Offset:-6
Orientation:forward strand
Alignment:------AGGTCAGCAATGA
TCTCAAAGGTCACCTG---
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C T G A T C G C G A T A G T C C G T A A T C G A T G C C G T A C G T A C G A T A T C G C T G A
C A G T G T A C A G C T G T A C G C T A C T G A T C G A A C T G A C T G A C G T A G T C C T G A G A T C T A G C G A C T C A T G A C G T A C G T A C G T

NRL/MA0842.1/Jaspar

Match Rank:9
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:AGGTCAGCAATGA
--GTCAGCANNTN
 C G T A A C T G A T C G C G A T A G T C C G T A A T C G A T G C C G T A C G T A C G A T A T C G C T G A
A C G T A C G T T C A G C G A T G T A C C G T A C A T G A G T C C T G A C G T A C G T A G C A T G C A T

MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-AGGTCAGCAATGA-
HWWGTCAGCAWWTTT
 A C G T C G T A A C T G A T C G C G A T A G T C C G T A A T C G A T G C C G T A C G T A C G A T A T C G C T G A A C G T
G T A C C G T A C G T A T A C G G C A T G T A C C G T A C A T G A G T C C G T A C G T A C G A T G C A T G C A T G A C T