Information for 15-GSCCTTGATCCTSGGT (Motif 30)

T A C G A T G C G A T C A G T C A G C T A C G T A C T G C T G A A C G T A T G C A G T C A C G T T A G C A C T G C T A G C G A T
Reverse Opposite:
C G T A A G T C T G A C A T C G C G T A C T A G A T C G G T C A A G C T A G T C G T C A C T G A A C T G C T A G T A C G A T G C
p-value:1e-7
log p-value:-1.803e+01
Information Content per bp:1.707
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif1.00%
Number of Background Sequences with motif18.1
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets50.6 +/- 27.7bp
Average Position of motif in Background42.7 +/- 25.1bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RHOXF1/MA0719.1/Jaspar

Match Rank:1
Score:0.59
Offset:4
Orientation:forward strand
Alignment:GSCCTTGATCCTSGGT
----ATAATCCC----
 T A C G A T G C G A T C A G T C A G C T A C G T A C T G C T G A A C G T A T G C A G T C A C G T T A G C A C T G C T A G C G A T
A C G T A C G T A C G T A C G T G C T A C G A T C T G A C G T A A C G T A G T C A G T C G T A C A C G T A C G T A C G T A C G T

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:2
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-GSCCTTGATCCTSGGT
TGACCTTGACCT-----
 A C G T T A C G A T G C G A T C A G T C A G C T A C G T A C T G C T G A A C G T A T G C A G T C A C G T T A G C A C T G C T A G C G A T
G A C T T A C G G C T A T G A C A G T C A G C T A C G T C T A G T C G A G T A C G T A C A G C T A C G T A C G T A C G T A C G T A C G T

OTX2/MA0712.1/Jaspar

Match Rank:3
Score:0.57
Offset:4
Orientation:forward strand
Alignment:GSCCTTGATCCTSGGT
----TTAATCCT----
 T A C G A T G C G A T C A G T C A G C T A C G T A C T G C T G A A C G T A T G C A G T C A C G T T A G C A C T G C T A G C G A T
A C G T A C G T A C G T A C G T G A C T G C A T C G T A C G T A C A G T G A T C A G T C A C G T A C G T A C G T A C G T A C G T

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:4
Score:0.56
Offset:3
Orientation:forward strand
Alignment:GSCCTTGATCCTSGGT
---NYTAATCCYB---
 T A C G A T G C G A T C A G T C A G C T A C G T A C T G C T G A A C G T A T G C A G T C A C G T T A G C A C T G C T A G C G A T
A C G T A C G T A C G T A T C G G A C T C G A T C G T A C G T A C A G T G A T C G A T C G A T C A G C T A C G T A C G T A C G T

Pitx1/MA0682.1/Jaspar

Match Rank:5
Score:0.56
Offset:4
Orientation:forward strand
Alignment:GSCCTTGATCCTSGGT
----TTAATCCC----
 T A C G A T G C G A T C A G T C A G C T A C G T A C T G C T G A A C G T A T G C A G T C A C G T T A G C A C T G C T A G C G A T
A C G T A C G T A C G T A C G T G A C T G C A T T C G A C G T A C A G T G A T C G A T C G T A C A C G T A C G T A C G T A C G T

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:6
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-GSCCTTGATCCTSGGT
TGACCTTGACCT-----
 A C G T T A C G A T G C G A T C A G T C A G C T A C G T A C T G C T G A A C G T A T G C A G T C A C G T T A G C A C T G C T A G C G A T
G A C T T C A G T G C A A G T C A G T C G A C T A C G T T A C G C G T A G T A C G A T C G A C T A C G T A C G T A C G T A C G T A C G T

Nr5a2/MA0505.1/Jaspar

Match Rank:7
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---GSCCTTGATCCTSGGT
GCTGACCTTGAACTN----
 A C G T A C G T A C G T T A C G A T G C G A T C A G T C A G C T A C G T A C T G C T G A A C G T A T G C A G T C A C G T T A G C A C T G C T A G C G A T
T A C G T G A C G C A T T C A G C T G A A G T C A G T C A G C T C A G T A T C G C T G A T C G A G A T C G A C T A G C T A C G T A C G T A C G T A C G T

PITX3/MA0714.1/Jaspar

Match Rank:8
Score:0.55
Offset:3
Orientation:forward strand
Alignment:GSCCTTGATCCTSGGT
---CTTAATCCC----
 T A C G A T G C G A T C A G T C A G C T A C G T A C T G C T G A A C G T A T G C A G T C A C G T T A G C A C T G C T A G C G A T
A C G T A C G T A C G T T A G C G A C T G C A T C T G A C T G A C A G T G T A C A G T C G A T C A C G T A C G T A C G T A C G T

GSC2/MA0891.1/Jaspar

Match Rank:9
Score:0.54
Offset:3
Orientation:forward strand
Alignment:GSCCTTGATCCTSGGT
---CCTAATCCGC---
 T A C G A T G C G A T C A G T C A G C T A C G T A C T G C T G A A C G T A T G C A G T C A C G T T A G C A C T G C T A G C G A T
A C G T A C G T A C G T T G A C G A T C C G A T G C T A G C T A A C G T G T A C A G T C A T C G G A T C A C G T A C G T A C G T

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:10
Score:0.54
Offset:3
Orientation:forward strand
Alignment:GSCCTTGATCCTSGGT
---GCTAATCC-----
 T A C G A T G C G A T C A G T C A G C T A C G T A C T G C T G A A C G T A T G C A G T C A C G T T A G C A C T G C T A G C G A T
A C G T A C G T A C G T A T C G G A T C G C A T C G T A G T C A A C G T A T G C A G T C A C G T A C G T A C G T A C G T A C G T