Information for 10-CGGCAGGGAGCCA (Motif 13)

A G T C T A C G A C T G A G T C C G T A A C T G A C T G A C T G C G T A A C T G A G T C A G T C G T C A
Reverse Opposite:
A C G T A C T G A C T G A G T C A C G T A G T C A G T C A G T C A C G T A C T G G T A C A G T C A C T G
p-value:1e-9
log p-value:-2.134e+01
Information Content per bp:1.914
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.71%
Number of Background Sequences with motif5.1
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets39.8 +/- 27.1bp
Average Position of motif in Background55.0 +/- 11.9bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:1
Score:0.70
Offset:-3
Orientation:reverse strand
Alignment:---CGGCAGGGAGCCA
DCHCAGCAGGRGGCC-
 A C G T A C G T A C G T A G T C T A C G A C T G A G T C C G T A A C T G A C T G A C T G C G T A A C T G A G T C A G T C G T C A
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:2
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--CGGCAGGGAGCCA
CACAGCAGGGGG---
 A C G T A C G T A G T C T A C G A C T G A G T C C G T A A C T G A C T G A C T G C G T A A C T G A G T C A G T C G T C A
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T A C G T A C G T

POL013.1_MED-1/Jaspar

Match Rank:3
Score:0.66
Offset:5
Orientation:reverse strand
Alignment:CGGCAGGGAGCCA
-----CGGAGC--
 A G T C T A C G A C T G A G T C C G T A A C T G A C T G A C T G C G T A A C T G A G T C A G T C G T C A
A C G T A C G T A C G T A C G T A C G T A T G C A C T G A C T G C G T A A C T G A G T C A C G T A C G T

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:4
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:CGGCAGGGAGCCA-
TGGCAGNCTGCCAG
 A G T C T A C G A C T G A G T C C G T A A C T G A C T G A C T G C G T A A C T G A G T C A G T C G T C A A C G T
C A G T A C T G A T C G T G A C G C T A A C T G T A G C G T A C C G A T A C T G T A G C G T A C G C T A T C A G

ZIC4/MA0751.1/Jaspar

Match Rank:5
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---CGGCAGGGAGCCA
NCNCAGCGGGGGGTC-
 A C G T A C G T A C G T A G T C T A C G A C T G A G T C C G T A A C T G A C T G A C T G C G T A A C T G A G T C A G T C G T C A
C A T G T G A C C T G A G A T C G T C A T C A G G A T C C T A G C A T G C A T G C A T G C A T G C A T G A G C T T G A C A C G T

ZIC1/MA0696.1/Jaspar

Match Rank:6
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--CGGCAGGGAGCCA
CACAGCGGGGGGTC-
 A C G T A C G T A G T C T A C G A C T G A G T C C G T A A C T G A C T G A C T G C G T A A C T G A G T C A G T C G T C A
T G A C C T G A A G T C T G C A T C A G A G T C C T A G C A T G T C A G C A T G C A T G C A T G A G C T T G A C A C G T

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:7
Score:0.62
Offset:0
Orientation:forward strand
Alignment:CGGCAGGGAGCCA-
TGGCACCATGCCAA
 A G T C T A C G A C T G A G T C C G T A A C T G A C T G A C T G C G T A A C T G A G T C A G T C G T C A A C G T
A C G T A C T G A C T G A G T C G C T A T A G C A T G C C T G A G C A T A C T G A G T C A G T C C G T A C G T A

ZIC3/MA0697.1/Jaspar

Match Rank:8
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---CGGCAGGGAGCCA
NCGCAGCGGGGGGTC-
 A C G T A C G T A C G T A G T C T A C G A C T G A G T C C G T A A C T G A C T G A C T G C G T A A C T G A G T C A G T C G T C A
C A T G G T A C C T A G G A T C T G C A T C A G A G T C C T A G A C T G A C T G C A T G C A T G C A T G A G C T T G A C A C G T

ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:9
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---CGGCAGGGAGCCA---------
RGGCAMTAGGGAGCCATRGAAGGTK
 A C G T A C G T A C G T A G T C T A C G A C T G A G T C C G T A A C T G A C T G A C T G C G T A A C T G A G T C A G T C G T C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C T A G C T A G C T A G A G T C T C G A T G C A G A C T C T G A A C T G A C T G A C T G C G T A A C T G A G T C G A T C C G T A A G C T C T A G A T C G G T C A C T G A C T A G T C A G A C G T A C G T

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:10
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-CGGCAGGGAGCCA--
TTGGCANNNTGCCAAG
 A C G T A G T C T A C G A C T G A G T C C G T A A C T G A C T G A C T G C G T A A C T G A G T C A G T C G T C A A C G T A C G T
G A C T C A G T A C T G C T A G T G A C G C T A T A G C C G T A T A C G C G A T A C T G G A T C G T A C G T C A C T G A T C A G