Information for 1-SCGGCAGCTGCCS (Motif 5)

A T G C G A T C C T A G T C A G A G T C C G T A A T C G A G T C A C G T A C T G A G T C G T A C T A C G
Reverse Opposite:
A T G C C A T G A C T G A G T C C G T A A C T G A T G C A C G T A C T G A G T C A G T C C T A G T A C G
p-value:1e-11
log p-value:-2.620e+01
Information Content per bp:1.763
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif5.37%
Number of Background Sequences with motif111.6
Percentage of Background Sequences with motif0.24%
Average Position of motif in Targets42.4 +/- 25.2bp
Average Position of motif in Background55.5 +/- 25.2bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.36
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0003.1_Ascl2_1/Jaspar

Match Rank:1
Score:0.88
Offset:-1
Orientation:forward strand
Alignment:-SCGGCAGCTGCCS---
CTCAGCAGCTGCTACTG
 A C G T A T G C G A T C C T A G T C A G A G T C C G T A A T C G A G T C A C G T A C T G A G T C G T A C T A C G A C G T A C G T A C G T
A G T C A C G T A G T C T C G A T C A G A G T C C G T A A T C G T A G C C G A T A C T G A G T C A G C T T G A C G A T C G C A T C A T G

Myog/MA0500.1/Jaspar

Match Rank:2
Score:0.87
Offset:2
Orientation:forward strand
Alignment:SCGGCAGCTGCCS
--GACAGCTGCAG
 A T G C G A T C C T A G T C A G A G T C C G T A A T C G A G T C A C G T A C T G A G T C G T A C T A C G
A C G T A C G T T C A G T C G A A G T C C G T A A C T G T A G C A C G T A C T G T A G C C T G A T A C G

MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer

Match Rank:3
Score:0.87
Offset:2
Orientation:forward strand
Alignment:SCGGCAGCTGCCS-
--AGCAGCTGCTNN
 A T G C G A T C C T A G T C A G A G T C C G T A A T C G A G T C A C G T A C T G A G T C G T A C T A C G A C G T
A C G T A C G T C T G A T C A G A G T C C G T A A T C G A T G C C G A T A C T G A G T C G A C T A T C G A G T C

Tcf12/MA0521.1/Jaspar

Match Rank:4
Score:0.86
Offset:2
Orientation:forward strand
Alignment:SCGGCAGCTGCCS
--AACAGCTGCAG
 A T G C G A T C C T A G T C A G A G T C C G T A A T C G A G T C A C G T A C T G A G T C G T A C T A C G
A C G T A C G T T C G A T C G A A G T C C G T A C T A G T A G C A C G T A C T G T A G C C G T A T A C G

Ascl2/MA0816.1/Jaspar

Match Rank:5
Score:0.86
Offset:2
Orientation:forward strand
Alignment:SCGGCAGCTGCCS
--AGCAGCTGCT-
 A T G C G A T C C T A G T C A G A G T C C G T A A T C G A G T C A C G T A C T G A G T C G T A C T A C G
A C G T A C G T T C G A T C A G G T A C C G T A A T C G T G A C C G A T A C T G A G T C G A C T A C G T

E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer

Match Rank:6
Score:0.85
Offset:1
Orientation:forward strand
Alignment:SCGGCAGCTGCCS
-NNACAGCTGC--
 A T G C G A T C C T A G T C A G A G T C C G T A A T C G A G T C A C G T A C T G A G T C G T A C T A C G
A C G T C G T A T G A C T C G A A G T C C G T A A T C G A T G C A C G T A C T G A G T C A C G T A C G T

Myod1/MA0499.1/Jaspar

Match Rank:7
Score:0.85
Offset:-1
Orientation:reverse strand
Alignment:-SCGGCAGCTGCCS
NGNGACAGCTGCN-
 A C G T A T G C G A T C C T A G T C A G A G T C C G T A A T C G A G T C A C G T A C T G A G T C G T A C T A C G
T C G A T C A G A T C G T C A G T C G A A G T C C G T A A C T G T A G C C G A T A C T G A T G C C G T A A C G T

Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer

Match Rank:8
Score:0.85
Offset:3
Orientation:forward strand
Alignment:SCGGCAGCTGCCS
---NCAGCTGCTG
 A T G C G A T C C T A G T C A G A G T C C G T A A T C G A G T C A C G T A C T G A G T C G T A C T A C G
A C G T A C G T A C G T T C G A A G T C C G T A A T C G A T G C C G A T A C T G A G T C A G C T A C T G

Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer

Match Rank:9
Score:0.83
Offset:0
Orientation:forward strand
Alignment:SCGGCAGCTGCCS
NNVVCAGCTGBN-
 A T G C G A T C C T A G T C A G A G T C C G T A A T C G A G T C A C G T A C T G A G T C G T A C T A C G
C T A G A G T C T A C G T A C G T G A C C G T A A C T G T A G C G C A T C A T G A T G C A G C T A C G T

NHLH1/MA0048.2/Jaspar

Match Rank:10
Score:0.82
Offset:2
Orientation:forward strand
Alignment:SCGGCAGCTGCCS
--CGCAGCTGCG-
 A T G C G A T C C T A G T C A G A G T C C G T A A T C G A G T C A C G T A C T G A G T C G T A C T A C G
A C G T A C G T T G A C T C A G G T A C T G C A A T C G T A G C A C G T T A C G G A T C A C T G A C G T