Information for 13-GAATAGTSTGACG (Motif 23)

A C T G C G T A C G T A C G A T C G T A A C T G A C G T A T C G A C G T C T A G G T C A G A T C C A T G
Reverse Opposite:
G A T C C T A G A C G T G A T C C G T A A T G C C G T A G T A C A C G T C G T A A C G T C G A T A G T C
p-value:1e-5
log p-value:-1.364e+01
Information Content per bp:1.810
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif1.61%
Number of Background Sequences with motif5.3
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets53.2 +/- 27.9bp
Average Position of motif in Background53.6 +/- 24.6bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)2.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:1
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--GAATAGTSTGACG
ATGAATATTC-----
 A C G T A C G T A C T G C G T A C G T A C G A T C G T A A C T G A C G T A T C G A C G T C T A G G T C A G A T C C A T G
G C T A A G C T T A C G G T C A C T G A C G A T C T G A G C A T C A G T A G T C A C G T A C G T A C G T A C G T A C G T

Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer

Match Rank:2
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:GAATAGTSTGACG
--ATGGGGTGAT-
 A C T G C G T A C G T A C G A T C G T A A C T G A C G T A T C G A C G T C T A G G T C A G A T C C A T G
A C G T A C G T T C G A A G C T C A T G A C T G A T C G T A C G G A C T A T C G C G T A A G C T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:3
Score:0.56
Offset:3
Orientation:forward strand
Alignment:GAATAGTSTGACG
---TWGTCTGV--
 A C T G C G T A C G T A C G A T C G T A A C T G A C G T A T C G A C G T C T A G G T C A G A T C C A T G
A C G T A C G T A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T A C G T

Arid5a/MA0602.1/Jaspar

Match Rank:4
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-GAATAGTSTGACG
CTAATATTGCTAAA
 A C G T A C T G C G T A C G T A C G A T C G T A A C T G A C G T A T C G A C G T C T A G G T C A G A T C C A T G
T A G C G A C T C T G A C G T A C G A T C G T A C G A T A G C T C T A G T G A C C G A T C T G A C G T A G C T A

PB0002.1_Arid5a_1/Jaspar

Match Rank:5
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-GAATAGTSTGACG
CTAATATTGCTAAA
 A C G T A C T G C G T A C G T A C G A T C G T A A C T G A C G T A T C G A C G T C T A G G T C A G A T C C A T G
T A G C G A C T C T G A C G T A C G A T C G T A C G A T A G C T C T A G T G A C C G A T C T G A C G T A G C T A

SREBF2/MA0596.1/Jaspar

Match Rank:6
Score:0.54
Offset:2
Orientation:forward strand
Alignment:GAATAGTSTGACG
--ATGGGGTGAT-
 A C T G C G T A C G T A C G A T C G T A A C T G A C G T A T C G A C G T C T A G G T C A G A T C C A T G
A C G T A C G T T C G A A C G T A T C G C T A G A T C G T A C G A C G T A C T G C G T A A G C T A C G T

Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:7
Score:0.54
Offset:-4
Orientation:forward strand
Alignment:----GAATAGTSTGACG
CCAAAAATAG-------
 A C G T A C G T A C G T A C G T A C T G C G T A C G T A C G A T C G T A A C T G A C G T A T C G A C G T C T A G G T C A G A T C C A T G
G T A C G A C T C G T A C T G A T C G A C G T A G C T A C A G T C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0208.1_Zscan4_2/Jaspar

Match Rank:8
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-GAATAGTSTGACG--
NNNNTTGTGTGCTTNN
 A C G T A C T G C G T A C G T A C G A T C G T A A C T G A C G T A T C G A C G T C T A G G T C A G A T C C A T G A C G T A C G T
A G C T C G T A C G A T C A G T C A G T C G A T C T A G A G C T A C T G C G A T A C T G A G T C A G C T C G A T A T G C C A T G

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:9
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--GAATAGTSTGACG
ATGMATATDC-----
 A C G T A C G T A C T G C G T A C G T A C G A T C G T A A C T G A C G T A T C G A C G T C T A G G T C A G A T C C A T G
G C T A A C G T C T A G G T A C G C T A G A C T C T G A G C A T C A T G G A T C A C G T A C G T A C G T A C G T A C G T

PB0168.1_Sox14_2/Jaspar

Match Rank:10
Score:0.52
Offset:-3
Orientation:reverse strand
Alignment:---GAATAGTSTGACG
NNNCCATTGTGTNAN-
 A C G T A C G T A C G T A C T G C G T A C G T A C G A T C G T A A C T G A C G T A T C G A C G T C T A G G T C A G A T C C A T G
A T C G T G A C A C T G A G T C G A T C C G T A A C G T A C G T T A C G G C A T A T C G A G C T T C A G T G C A T C A G A C G T