Information for 1-GAAGWAGAACTATGTC (Motif 1)

C A T G C G T A C T G A A T C G C G A T C T G A T A C G C G T A C T G A A T G C C G A T C T G A C G A T T A C G A C G T A G T C
Reverse Opposite:
C T A G G T C A A G T C C G T A A G C T C G T A A T C G A G C T A C G T A G T C A G C T G C T A A T G C A G C T C G A T G T A C
p-value:1e-14
log p-value:-3.259e+01
Information Content per bp:1.703
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif2.69%
Number of Background Sequences with motif0.5
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets52.1 +/- 26.0bp
Average Position of motif in Background65.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.8
Multiplicity (# of sites on avg that occur together)1.60
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0058.1_Sfpi1_1/Jaspar

Match Rank:1
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-GAAGWAGAACTATGTC
TTAAGAGGAAGTTA---
 A C G T C A T G C G T A C T G A A T C G C G A T C T G A T A C G C G T A C T G A A T G C C G A T C T G A C G A T T A C G A C G T A G T C
A G C T C G A T C G T A C G T A T C A G T C G A C T A G A C T G C G T A C G T A T A C G G A C T C G A T G T A C A C G T A C G T A C G T

RORA(var.2)/MA0072.1/Jaspar

Match Rank:2
Score:0.54
Offset:4
Orientation:forward strand
Alignment:GAAGWAGAACTATGTC--
----TATAAGTAGGTCAA
 C A T G C G T A C T G A A T C G C G A T C T G A T A C G C G T A C T G A A T G C C G A T C T G A C G A T T A C G A C G T A G T C A C G T A C G T
A C G T A C G T A C G T A C G T C G A T C G T A C G A T G T C A C G T A A T C G A C G T C T G A A C T G A C T G A C G T A G T C C G T A T C G A

SOX9/MA0077.1/Jaspar

Match Rank:3
Score:0.54
Offset:6
Orientation:reverse strand
Alignment:GAAGWAGAACTATGTC
------GAACAATGG-
 C A T G C G T A C T G A A T C G C G A T C T G A T A C G C G T A C T G A A T G C C G A T C T G A C G A T T A C G A C G T A G T C
A C G T A C G T A C G T A C G T A C G T A C G T C T A G C G T A G C T A A G T C G C T A G C T A C G A T C T A G T A C G A C G T

PB0063.1_Sox13_1/Jaspar

Match Rank:4
Score:0.53
Offset:2
Orientation:forward strand
Alignment:GAAGWAGAACTATGTC--
--TTAAGAACAATAAATT
 C A T G C G T A C T G A A T C G C G A T C T G A T A C G C G T A C T G A A T G C C G A T C T G A C G A T T A C G A C G T A G T C A C G T A C G T
A C G T A C G T C G A T G A C T C G T A C T G A C A T G C T G A C G T A G A T C C G T A C T G A G C A T C G T A C G T A C G A T G C A T G C A T

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:5
Score:0.53
Offset:7
Orientation:forward strand
Alignment:GAAGWAGAACTATGTC-
-------AAYTAGGTCA
 C A T G C G T A C T G A A T C G C G A T C T G A T A C G C G T A C T G A A T G C C G A T C T G A C G A T T A C G A C G T A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A

Sox5/MA0087.1/Jaspar

Match Rank:6
Score:0.53
Offset:6
Orientation:reverse strand
Alignment:GAAGWAGAACTATGTC
------NAACAAT---
 C A T G C G T A C T G A A T C G C G A T C T G A T A C G C G T A C T G A A T G C C G A T C T G A C G A T T A C G A C G T A G T C
A C G T A C G T A C G T A C G T A C G T A C G T G C A T C G T A C T G A A G T C C G T A G T C A A C G T A C G T A C G T A C G T

PB0062.1_Sox12_1/Jaspar

Match Rank:7
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:GAAGWAGAACTATGTC
-NTTNAGAACAATTA-
 C A T G C G T A C T G A A T C G C G A T C T G A T A C G C G T A C T G A A T G C C G A T C T G A C G A T T A C G A C G T A G T C
A C G T C A T G C G A T C G A T C A G T C G T A A C T G C T G A G C T A A G T C G C T A C G T A G C A T C G A T C T G A A C G T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:8
Score:0.52
Offset:5
Orientation:reverse strand
Alignment:GAAGWAGAACTATGTC
-----VRAACAATGG-
 C A T G C G T A C T G A A T C G C G A T C T G A T A C G C G T A C T G A A T G C C G A T C T G A C G A T T A C G A C G T A G T C
A C G T A C G T A C G T A C G T A C G T T G A C C T G A T C G A C G T A T A G C G T C A T C G A G C A T C T A G T A C G A C G T

Sox6/MA0515.1/Jaspar

Match Rank:9
Score:0.52
Offset:5
Orientation:reverse strand
Alignment:GAAGWAGAACTATGTC
-----AAAACAATGG-
 C A T G C G T A C T G A A T C G C G A T C T G A T A C G C G T A C T G A A T G C C G A T C T G A C G A T T A C G A C G T A G T C
A C G T A C G T A C G T A C G T A C G T T C G A C T G A T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G A C G T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.52
Offset:6
Orientation:reverse strand
Alignment:GAAGWAGAACTATGTC
------GAACAATGGN
 C A T G C G T A C T G A A T C G C G A T C T G A T A C G C G T A C T G A A T G C C G A T C T G A C G A T T A C G A C G T A G T C
A C G T A C G T A C G T A C G T A C G T A C G T C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G