Information for 4-CCGGACRGCCCKSGGY (Motif 5)

G T A C T A G C A C T G A T C G T G C A G A T C C T A G A T C G A G T C A G T C A G T C A C G T A T G C C T A G A T C G G A C T
Reverse Opposite:
C T G A A T G C A G T C T A C G T G C A A C T G A C T G C T A G A T G C G A T C C A T G A C G T A T G C A G T C A T C G A C T G
p-value:1e-10
log p-value:-2.494e+01
Information Content per bp:1.684
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif1.95%
Number of Background Sequences with motif1.5
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets39.8 +/- 14.9bp
Average Position of motif in Background57.9 +/- 7.2bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sp1(Zf)/Promoter/Homer

Match Rank:1
Score:0.60
Offset:1
Orientation:forward strand
Alignment:CCGGACRGCCCKSGGY
-GGCCCCGCCCCC---
 G T A C T A G C A C T G A T C G T G C A G A T C C T A G A T C G A G T C A G T C A G T C A C G T A T G C C T A G A T C G G A C T
A C G T T A C G C T A G A T G C G A T C G T A C A G T C C T A G A G T C A G T C A G T C G T A C A G T C A C G T A C G T A C G T

REL/MA0101.1/Jaspar

Match Rank:2
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:CCGGACRGCCCKSGGY
--GGAAANCCCC----
 G T A C T A G C A C T G A T C G T G C A G A T C C T A G A T C G A G T C A G T C A G T C A C G T A T G C C T A G A T C G G A C T
A C G T A C G T A C T G C T A G C G T A C G T A C G T A A C G T G A T C G A T C T A G C T A G C A C G T A C G T A C G T A C G T

PB0010.1_Egr1_1/Jaspar

Match Rank:3
Score:0.56
Offset:4
Orientation:forward strand
Alignment:CCGGACRGCCCKSGGY--
----TCCGCCCCCGCATT
 G T A C T A G C A C T G A T C G T G C A G A T C C T A G A T C G A G T C A G T C A G T C A C G T A T G C C T A G A T C G G A C T A C G T A C G T
A C G T A C G T A C G T A C G T G A C T G T A C G A T C T C A G A G T C A T G C A G T C G T A C G A T C A C T G A G T C C G T A G A C T A C G T

MF0003.1_REL_class/Jaspar

Match Rank:4
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:CCGGACRGCCCKSGGY
--GGAAATCCCC----
 G T A C T A G C A C T G A T C G T G C A G A T C C T A G A T C G A G T C A G T C A G T C A C G T A T G C C T A G A T C G G A C T
A C G T A C G T C A T G C T A G C T G A T C G A G C T A C G A T G A T C G T A C T G A C T A G C A C G T A C G T A C G T A C G T

Zfx/MA0146.2/Jaspar

Match Rank:5
Score:0.55
Offset:5
Orientation:reverse strand
Alignment:CCGGACRGCCCKSGGY---
-----CAGGCCNNGGCCNN
 G T A C T A G C A C T G A T C G T G C A G A T C C T A G A T C G A G T C A G T C A G T C A C G T A T G C C T A G A T C G G A C T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A T G C C T G A C T A G A C T G T A G C A G T C A C G T T G A C C T A G T A C G G A T C A T G C T A G C T A G C

POL003.1_GC-box/Jaspar

Match Rank:6
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:CCGGACRGCCCKSGGY
NAGCCCCGCCCCCN--
 G T A C T A G C A C T G A T C G T G C A G A T C C T A G A T C G A G T C A G T C A G T C A C G T A T G C C T A G A T C G G A C T
G T A C T C G A T C A G G T A C G A T C T G A C G A T C C A T G A G T C A G T C A G T C G T A C G A T C G C A T A C G T A C G T

RELA/MA0107.1/Jaspar

Match Rank:7
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:CCGGACRGCCCKSGGY
--GGAAATTCCC----
 G T A C T A G C A C T G A T C G T G C A G A T C C T A G A T C G A G T C A G T C A G T C A C G T A T G C C T A G A T C G G A C T
A C G T A C G T A C T G A C T G C T G A C G T A C G T A A G C T A G C T A G T C G T A C T A G C A C G T A C G T A C G T A C G T

THAP1/MA0597.1/Jaspar

Match Rank:8
Score:0.54
Offset:5
Orientation:forward strand
Alignment:CCGGACRGCCCKSGGY
-----CTGCCCGCA--
 G T A C T A G C A C T G A T C G T G C A G A T C C T A G A T C G A G T C A G T C A G T C A C G T A T G C C T A G A T C G G A C T
A C G T A C G T A C G T A C G T A C G T A G T C G A C T C A T G G A T C G T A C G T A C C A T G A G T C G T C A A C G T A C G T

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:9
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:CCGGACRGCCCKSGGY
-GGGAAATCCCCN---
 G T A C T A G C A C T G A T C G T G C A G A T C C T A G A T C G A G T C A G T C A G T C A C G T A T G C C T A G A T C G G A C T
A C G T C A T G C T A G C T A G C T G A G C T A C G T A A G C T G A T C G T A C G T A C G T A C G C A T A C G T A C G T A C G T

GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer

Match Rank:10
Score:0.52
Offset:2
Orientation:reverse strand
Alignment:CCGGACRGCCCKSGGY
--GGACCACCCACG--
 G T A C T A G C A C T G A T C G T G C A G A T C C T A G A T C G A G T C A G T C A G T C A C G T A T G C C T A G A T C G G A C T
A C G T A C G T C T A G A T C G T C G A G T A C A G T C G C T A A T G C G T A C G A T C C G T A T A G C T C A G A C G T A C G T