Information for 13-CTSACCTYACARG (Motif 28)

A G T C A C G T A T C G C G T A T A G C G T A C A C G T A G C T G C T A A G T C C G T A C T G A A C T G
Reverse Opposite:
G T A C A G C T C G A T A C T G C A G T T C G A C G T A A C T G A C T G A C G T A T G C C G T A A C T G
p-value:1e-6
log p-value:-1.427e+01
Information Content per bp:1.779
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif2.93%
Number of Background Sequences with motif67.3
Percentage of Background Sequences with motif0.14%
Average Position of motif in Targets39.9 +/- 31.0bp
Average Position of motif in Background49.2 +/- 24.0bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.17
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:1
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:CTSACCTYACARG
-TGACCTYA----
 A G T C A C G T A T C G C G T A T A G C G T A C A C G T A G C T G C T A A G T C C G T A C T G A A C T G
A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A A C G T A C G T A C G T A C G T

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:2
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---CTSACCTYACARG
NNACTTACCTN-----
 A C G T A C G T A C G T A G T C A C G T A T C G C G T A T A G C G T A C A C G T A G C T G C T A A G T C C G T A C T G A A C T G
C T G A G A C T G C T A G A T C G C A T G A C T C G T A A G T C G A T C G C A T A C T G A C G T A C G T A C G T A C G T A C G T

Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer

Match Rank:3
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--CTSACCTYACARG
GKVTCADRTTWC---
 A C G T A C G T A G T C A C G T A T C G C G T A T A G C G T A C A C G T A G C T G C T A A G T C C G T A C T G A A C T G
C T A G C A T G T G C A A C G T A G T C C G T A C A T G T C A G A C G T A C G T G C T A A G T C A C G T A C G T A C G T

NR4A2/MA0160.1/Jaspar

Match Rank:4
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:CTSACCTYACARG
GTGACCTT-----
 A G T C A C G T A T C G C G T A T A G C G T A C A C G T A G C T G C T A A G T C C G T A C T G A A C T G
A C T G A C G T C T A G C G T A A G T C G T A C A G C T A G C T A C G T A C G T A C G T A C G T A C G T

Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer

Match Rank:5
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--CTSACCTYACARG
GKMTCADRTTWC---
 A C G T A C G T A G T C A C G T A T C G C G T A T A G C G T A C A C G T A G C T G C T A A G T C C G T A C T G A A C T G
C T A G C A G T T G C A A C G T G A T C T C G A C T A G T C A G A C G T C A G T G C A T G A T C A C G T A C G T A C G T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:6
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:CTSACCTYACARG
-TGACCYCT----
 A G T C A C G T A T C G C G T A T A G C G T A C A C G T A G C T G C T A A G T C C G T A C T G A A C T G
A C G T A G C T T C A G T G C A G T A C T G A C A G C T A G T C A G C T A C G T A C G T A C G T A C G T

Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer

Match Rank:7
Score:0.57
Offset:1
Orientation:forward strand
Alignment:CTSACCTYACARG
-TGACCTTTNCNT
 A G T C A C G T A T C G C G T A T A G C G T A C A C G T A G C T G C T A A G T C C G T A C T G A A C T G
A C G T A C G T C T A G C G T A A G T C G T A C A C G T A C G T A C G T G T C A G T A C T G A C G A C T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:8
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:CTSACCTYACARG
-TGACCT------
 A G T C A C G T A T C G C G T A T A G C G T A C A C G T A G C T G C T A A G T C C G T A C T G A A C T G
A C G T A C G T C A T G G C T A G T A C G T A C G A C T A C G T A C G T A C G T A C G T A C G T A C G T

PB0053.1_Rara_1/Jaspar

Match Rank:9
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---CTSACCTYACARG
NNNGTGACCTTTGNNN
 A C G T A C G T A C G T A G T C A C G T A T C G C G T A T A G C G T A C A C G T A G C T G C T A A G T C C G T A C T G A A C T G
G T A C C G T A A T C G C T A G A G C T T C A G G T C A G T A C G T A C A G C T A G C T C G A T C A T G T C G A C A T G G T C A

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:CTSACCTYACARG
CTGACCTTTG---
 A G T C A C G T A T C G C G T A T A G C G T A C A C G T A G C T G C T A A G T C C G T A C T G A A C T G
A T G C A C G T T A C G T G C A G T A C A G T C G A C T A G C T A C G T T C A G A C G T A C G T A C G T