Information for 2-TCGGATAGAT (Motif 5)

A C G T A T G C A C T G A C T G C G T A A C G T C G T A A T C G C G T A A C G T
Reverse Opposite:
C G T A A C G T A T G C A C G T G T C A A C G T G T A C A G T C A T C G C G T A
p-value:1e-10
log p-value:-2.347e+01
Information Content per bp:1.890
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif1.02%
Number of Background Sequences with motif3.2
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets55.8 +/- 27.2bp
Average Position of motif in Background46.2 +/- 22.2bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0163.1_Six6_2/Jaspar

Match Rank:1
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--TCGGATAGAT-----
ANNNGGATATATCCNNN
 A C G T A C G T A C G T A T G C A C T G A C T G C G T A A C G T C G T A A T C G C G T A A C G T A C G T A C G T A C G T A C G T A C G T
G T C A C T A G C T A G A G T C T C A G C A T G T C G A A C G T T G C A A G C T C T G A A G C T T G A C A T G C T A G C G C T A A C G T

HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer

Match Rank:2
Score:0.60
Offset:2
Orientation:forward strand
Alignment:TCGGATAGAT--
--NTATYGATCH
 A C G T A T G C A C T G A C T G C G T A A C G T C G T A A T C G C G T A A C G T A C G T A C G T
A C G T A C G T C T A G C A G T C G T A A C G T A G T C A C T G C G T A A G C T A G T C G A T C

CUX1/MA0754.1/Jaspar

Match Rank:3
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:TCGGATAGAT--
--NTATCGATTA
 A C G T A T G C A C T G A C T G C G T A A C G T C G T A A T C G C G T A A C G T A C G T A C G T
A C G T A C G T C A G T A C G T C G T A G C A T A G T C T C A G T C G A G A C T G A C T C T G A

PB0098.1_Zfp410_1/Jaspar

Match Rank:4
Score:0.59
Offset:-5
Orientation:forward strand
Alignment:-----TCGGATAGAT--
TATTATGGGATGGATAA
 A C G T A C G T A C G T A C G T A C G T A C G T A T G C A C T G A C T G C G T A A C G T C G T A A T C G C G T A A C G T A C G T A C G T
C G A T T C G A C A G T C G A T G T C A C G A T C A T G C A T G C A T G C T G A C A G T C T A G A C T G T G C A C A G T C G T A T G C A

Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer

Match Rank:5
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:TCGGATAGAT----
----ATTGATTYND
 A C G T A T G C A C T G A C T G C G T A A C G T C G T A A T C G C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G T A A C G T A G C T A T C G G T C A A G C T G A C T A G C T T G A C C G A T

DMRT3/MA0610.1/Jaspar

Match Rank:6
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:TCGGATAGAT-
NTTGATACATT
 A C G T A T G C A C T G A C T G C G T A A C G T C G T A A T C G C G T A A C G T A C G T
C G T A C G A T A C G T A C T G G C T A A C G T C G T A A G T C C G T A C G A T A C G T

CUX2/MA0755.1/Jaspar

Match Rank:7
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:TCGGATAGAT--
--TTATCGATTA
 A C G T A T G C A C T G A C T G C G T A A C G T C G T A A T C G C G T A A C G T A C G T A C G T
A C G T A C G T C G A T C G A T C G T A G C A T G A T C T C A G T C G A G A C T G A C T C G T A

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:8
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:TCGGATAGAT---
-ATGATKGATGRC
 A C G T A T G C A C T G A C T G C G T A A C G T C G T A A T C G C G T A A C G T A C G T A C G T A C G T
A C G T C T G A C G A T A T C G C G T A C G A T C A G T C T A G C G T A C G A T A C T G C T G A A T G C

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:9
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:TCGGATAGAT--
--TGATTGATGA
 A C G T A T G C A C T G A C T G C G T A A C G T C G T A A T C G C G T A A C G T A C G T A C G T
A C G T A C G T C G A T T C A G G T C A A G C T C G A T C T A G C G T A A C G T C A T G C T G A

PBX1/MA0070.1/Jaspar

Match Rank:10
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:TCGGATAGAT--
TTTGATTGATGN
 A C G T A T G C A C T G A C T G C G T A A C G T C G T A A T C G C G T A A C G T A C G T A C G T
C G A T G C A T C A G T A C T G G T C A C G A T A C G T A C T G C G T A A C G T A C T G C A T G